DN134949

Overview
NameDN134949
Unique NameDN134949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134949 vs. ExPASy Swiss-Prot
Match: MLR1_CAEEL (Myosin regulatory light chain 1 OS=Caenorhabditis elegans GN=mlc-1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 41/133 (30.83%), Postives = 69/133 (51.88%), Query Frame = 2
Query:   26 EAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 421
            EAF + D++ DG I   +L  +  S+GQ   ++++  MI E     +G I+F  FL L   ++  TD E  +  AF +FDK   G I   +L  ++ N  GE L ++EV  M +       G+++Y+ F  ++
Sbjct:   31 EAFGIMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKEA----SGPINFTVFLTLFGERLTGTDPEATIIGAFAMFDKKDCGKIKEDDLIKILQNKRGEPLDEDEVKAMYKGKPPIEGGEVDYKAFAHLI 159          
BLAST of DN134949 vs. ExPASy Swiss-Prot
Match: CDPK4_PLAF7 (Calcium-dependent protein kinase 4 OS=Plasmodium falciparum (isolate 3D7) GN=CPK4 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 46/137 (33.58%), Postives = 73/137 (53.28%), Query Frame = 2
Query:   32 FSLFDKDGDGCITTKEL-----------GTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 409
            F   DK+GDG +   EL           G     L     E E+  ++N +D D NG I++ EFL +   + K   S E L++AF++FDKD +G ISA EL  +   L + ++ E    +++E D + DG+I+++EF
Sbjct:  385 FKKMDKNGDGQLDRNELIIGYKELLKLKGEDTSDLDNAAIEYEVDQILNSIDLDQNGYIEYSEFLTVSIDR-KLLLSTERLEKAFKLFDKDGSGKISANELAQLF-GLSD-VSSECWKTVLKEVDQNNDGEIDFKEF 518          
BLAST of DN134949 vs. ExPASy Swiss-Prot
Match: MLRS_CHICK (Myosin regulatory light chain 2, skeletal muscle isoform OS=Gallus gallus GN=MYLPF PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 2
Query:   26 EAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 421
            EAF++ D++ DG I   +L     ++G+ N    EL  MI E     +G I+F  FL +   K+K  D E+ +  AF+V D D  G I  + L  ++T   ++ T EE+  M      D  G ++Y+    V+
Sbjct:   31 EAFTVIDQNRDGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA----SGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTQCDRFTPEEIKNMWAAFPPDVAGNVDYKNICYVI 159          
BLAST of DN134949 vs. ExPASy Swiss-Prot
Match: MLC1_DROPS (Myosin light chain alkali OS=Drosophila pseudoobscura pseudoobscura GN=Mlc1 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 42/136 (30.88%), Postives = 72/136 (52.94%), Query Frame = 2
Query:   32 FSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA--RKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DVDGDGQINYEEFVKVMMA 427
            F +    G+G I   +LG  +R+L  NPT A ++ M           I   EFL + +  +K K+    E+  E  +++DK++NG +  AEL+H +  LGE L DE+V+ +  +     D +G I Y +F++ +M+
Sbjct:   16 FEVMGSAGEG-IDAVDLGDALRALNLNPTLALIEKM-GGTKKRNEKKIKMDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTMMLAELQHALLALGESLDDEQVETLFADCMDPEDDEGLIPYSQFIQRLMS 149          
BLAST of DN134949 vs. ExPASy Swiss-Prot
Match: EFCB2_HUMAN (EF-hand calcium-binding domain-containing protein 2 OS=Homo sapiens GN=EFCAB2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 2
Query:   17 RV*EAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEV-DADGNGTIDFPEFLNLMARKMKDTD----SEEELKEAFRVFDKDQNGFISAAELRHVMT 316
            ++ EAF +FD + +  +  +E+GT++RSLG  PTE EL D+I EV + +  G I F +FL +M   + +       E+ L  AF V D  + GF++  EL   MT
Sbjct:  154 KIKEAFEVFDHESNNTVDVREIGTIIRSLGCCPTEGELHDLIAEVEEEEPTGYIRFEKFLPVMTEILLERKYRPIPEDVLLRAFEVLDSAKRGFLTKDELIKYMT 258          
The following BLAST results are available for this feature:
BLAST of DN134949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
MLR1_CAEEL7.461e-1130.83Myosin regulatory light chain 1 OS=Caenorhabditis ... [more]
CDPK4_PLAF77.461e-1133.58Calcium-dependent protein kinase 4 OS=Plasmodium f... [more]
MLRS_CHICK9.744e-1130.83Myosin regulatory light chain 2, skeletal muscle i... [more]
MLC1_DROPS9.744e-1130.88Myosin light chain alkali OS=Drosophila pseudoobsc... [more]
EFCB2_HUMAN9.744e-1137.14EF-hand calcium-binding domain-containing protein ... [more]

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Properties
Property NameValue
Genbank descriptionwca03g07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03g07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134949 ID=DN134949; Name=DN134949; organism=Citrus sinensis; type=EST; length=659bp
CGGCCGGGCAGATCTCCGAGTTTAAGAAGCCTTCAGCTTGTTCGACAAGG
ACGGCGACGGTTGCATTACCACCAAGGAGCTTGGCACTGTTATGAGGTCA
CTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATGATCAATGAAGT
GGATGCTGATGGTAATGGAACTATTGATTTTCCTGAATTCCTAAACCTCA
TGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGCTGAAAGAGGCC
TTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCAGCTGCTGAACT
GCGTCATGTGATGACAAACCTTGGGGAGAAGCTTACTGATGAGGAAGTCG
ATGAGATGATAAGGGAAGCTGATGTCGATGGTGATGGCCAGATAAATTAT
GAGGAATTTGTCAAGGTTATGATGGCTAAGTAAGTGACTCCACCCAACCA
AAACTTCCTGGAAAAAGAAGAAATTGGCTGATTAATATAATTGGTTCCCT
AGTTTCCTTTTTTATAAATTTTAATTTGATAACTCTGAGGTCAAGCTAAA
GGAAGCATGTTGTCTCCTGCTTCAATTTGTCTTGTGACTGGAGCAACTTT
TCAGTTTTTTAATGTTTTAGTTTTTTTCCGCTCTTCTGTGANCATTGTTT
CTGTTAAAT
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