DN134944

Overview
NameDN134944
Unique NameDN134944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.516e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  189 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 437
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.516e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  189 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 437
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.898e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  168 NETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 425
            N      VV+D    WCGPC+ IAP   EL++K  +V+FLK+D + + KS+A +  ++ +PTF  LK+ KIV +V GAK ++L   I
Sbjct:   90 NAAGDKTVVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAI 176          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.898e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  189 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 437
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.703e-13
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 3
Query:   87 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 431
            AE+   EEG V      E + E L+ + E    +V VDF+A+WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  +  +PTF F K  + V +  GA   +L+++I++
Sbjct:  402 AEIETLEEGLVRVIKDKEEFEEVLKDAGEK---LVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 31/83 (37.35%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  186 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 434
            V VVDF A WCGPC+++ PFL +L+++     F+ V+ D+   +A    V A+PT +  ++G+ +D++VGA  + L   +AK+
Sbjct:   37 VTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 35/91 (38.46%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  171 ETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 437
            ET + +V+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   13 ETSEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 35/91 (38.46%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  171 ETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 437
            ET + +V+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   13 ETSEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.314e-12
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  129 HTVEAWNE-QLQKSNETKQLV------VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 437
            H  EA NE Q+   +   +LV      V+VDF A WCGPCR IAP + ELAK+    +   K++ DE  + AT + + ++PT +F K G+  D V+GA  K  L + + K++
Sbjct:   61 HAREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of DN134944 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.314e-12
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = 3
Query:  186 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 434
            +V++DF A WCGPC+ + P L  L  ++ +VL  KV++D+  + A  + V ++PT +  K+GK VD+VVG K K+ L + I +H
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQH 101          
The following BLAST results are available for this feature:
BLAST of DN134944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
THIOM_MOUSE4.516e-1342.86Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN4.516e-1342.86Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
TRXF_PEA5.898e-1342.53Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
THIOM_BOVIN5.898e-1342.86Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
TXND2_MOUSE7.703e-1334.78Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
TRX2_SCHPO1.006e-1237.35Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
THIO_LISMO1.006e-1238.46Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN1.006e-1238.46Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
TRXM_PEA1.314e-1238.39Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
THIO_CHLCV1.314e-1240.48Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionwca03f11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03f11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134944 ID=DN134944; Name=DN134944; organism=Citrus sinensis; type=EST; length=646bp
CCATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGTAT
CGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAGC
AGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAACG
AGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTAGTTGTTGTTGAT
TTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGC
AGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGG
ATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACT
TTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAA
GAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTG
CCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGA
CCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGG
ATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAA
GCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGTTGTT
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