DN134942

Overview
NameDN134942
Unique NameDN134942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13418 contig Csv1_Contig13418:44..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN134942 vs. ExPASy Swiss-Prot
Match: YFH9_SCHPO (Uncharacterized RNA-binding protein C23A1.09 OS=Schizosaccharomyces pombe GN=SPAC23A1.09 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.155e-22
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:  334 PQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSXGPSTGP 612
            P +S+EG+II+VTGVH EA E+ ++++F ++G ++NLHLNLDRRTG+VKGYALIEY   E+AQ A+   N   LL + L VD+AF   P   P
Sbjct:    3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKN-LSLLDEKLEVDFAFLEPPERAP 94
The following BLAST results are available for this feature:
BLAST of DN134942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YFH9_SCHPO2.155e-2253.76Uncharacterized RNA-binding protein C23A1.09 OS=Sc... [more]

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Properties
Property NameValue
Genbank descriptionwca03f09 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03f09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134942 ID=DN134942; Name=DN134942; organism=Citrus sinensis; type=EST; length=613bp
GGCCGGGGGTCTTCTCAGAATAAAAATTAAAACGCAAGACGCAGGCAAAT
CTCATATCCCTAAAAGTTCGAAAAAAACACAACAAAAATGGCGAACGCAG
AAGTGGACGCGCTCGACTTCGAGGACGACGACTTGATGGACGAGGACGGG
ACTGCCGACGTCGATGCATCCTCTTCCCCGCGGGCCCCGCAGCCCAAGCT
TAAGTCCGCCATCACTGGTGGCGCACCTAAGAAGACCAAAGGACGCGGTT
TTCGTGAAGAAGCCGACTCCGAGCGACATAGCCGGCTCGCTGATCGTAAT
TTTGAGTCTCTTGGCACCGATGGGGGACCGGGTCCCCAACGATCTATTGA
GGGATGGATAATTTTGGTTACTGGTGTGCATGAAGAGGCACAAGAAGATG
ATTTACAAAATGTATTTGGTGAATATGGGGAGATCAGAAACTTGCATTTG
AATCTTGATCGTCGTACAGGTTTTGTGAAGGGGTATGCGCTGATTGAATA
TGAGAATTTTGAGGAAGCGCAGAATGCCATAACTGCAATGAATGGAGGTG
AACTTCTTACACAGACCCTGACTGTTGATTGGGCCTTCAGCAANGGGCCT
AGTACTGGACCCT
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