DN134911

Overview
NameDN134911
Unique NameDN134911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  156 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 392
            VV+D    WCGPC+ +AP   +LA++  +V+FLK+D + E K++A +  +  +PTF  LKE  +V +V GAK ++L + I
Sbjct:  105 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 184          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11
Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  147 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 419
            +++VV+D    WCGPC+ IAP    L++K  +V+FLK+D + E + +A +  +  +PTF  LK+ ++V +V GAK ++L   I    + +S+
Sbjct:   90 EKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARSASSS 181          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11
Identity = 32/90 (35.56%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  141 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 404
            ++ + V+VDF ASWCGPC  + P + +LA       +  K++VDE  ++A  + + ++PT + +K GK+VD++VGA  K  + + I +H+
Sbjct:   18 DSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEHI 107          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11
Identity = 32/92 (34.78%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  141 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 416
            +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ GA   EL + + +H+++ S
Sbjct:   31 KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGS 122          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 3
Query:  156 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 404
            V+VDF A WCGPCR +AP + E++++    V  +K++ DE  + A+ + + ++PT M  K G+ VD VVGA  K  L  T+ K+L
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLASTLEKYL 107          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 30/86 (34.88%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  156 VVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 407
            V+VDF A WCGPCR ++P +  +A++   ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+GA  K  L+ T+ K+++
Sbjct:   22 VLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTVIGAVPKSTLESTLNKYIS 107          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: GLRX3_HUMAN (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 31/92 (33.70%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  141 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 416
            + K L+VV F A W   C  +   +AELAK+LP V F+K++ + +  V+  + + ++PTF+F K  + +D++ GA   EL + + +H ++ S
Sbjct:   29 KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS 120          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: THIO3_DICDI (Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  117 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 404
            NE+L K  +  Q VVVDF+A WCGPCR IAP   +L+ +     F+ VD+D++ +      + ++PTF F   G  V +  GA +  L+ T+  ++
Sbjct:   10 NEELDKYLQ-HQRVVVDFSAEWCGPCRAIAPVFDKLSNEFTTFTFVHVDIDKVNTHPIVKEIRSVPTFYFYVNGAKVSEFSGANEATLRSTLEANI 104          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 3
Query:  102 TVEAWNEQLQKSN-ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 365
            TV+  N   Q    ++ + VVVDF A WCGPC+ IAP L E+A ++   V   KV++DE   +A  + V ++PT +  K+G++   +VGA
Sbjct:    2 TVKVDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELAANMVGA 91          
BLAST of DN134911 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 31/92 (33.70%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  141 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 416
            +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ GA   EL + + +H+++ +
Sbjct:   31 KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGA 122          
The following BLAST results are available for this feature:
BLAST of DN134911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
TRXF_SPIOL1.804e-1141.25Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
TRXF_BRANA1.804e-1135.87Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
THIO_CHLLT1.804e-1135.56Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
GLRX3_RAT1.804e-1134.78Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
THIO_SYNY32.356e-1141.18Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO_PORPU2.356e-1134.88Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
GLRX3_HUMAN2.356e-1133.70Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2[more]
THIO3_DICDI3.078e-1136.46Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC ... [more]
THIO1_CORNE4.019e-1138.89Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
GLRX3_MOUSE4.019e-1133.70Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionwca03b08 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03b08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134911 ID=DN134911; Name=DN134911; organism=Citrus sinensis; type=EST; length=629bp
TACGGCCGGGGNNNAATATCGTTGGGTGGAGTAGTGGTGGTAATAACCGC
GGANNGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATNNNGGTGCCA
CACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAAC
AGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCA
TCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTG
GCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTT
ATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTA
ATTTACTGTTCCATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTT
CATATTTGTTGTTGAACCTANNTTTGACG
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