DN134908

Overview
NameDN134908
Unique NameDN134908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPD_NEUCR (ATP synthase subunit delta, mitochondrial OS=Neurospora crassa GN=atp-16 PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 44/131 (33.59%), Postives = 77/131 (58.78%), Query Frame = 3
Query:  219 SIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSAL 608
            ++  K+ ++  LP+ +   +++V  V +PA +G+MGVL  HVP+I +LKPG++ V  +    K+YF+S GFA + P S   I AVE   ++      V+  +AE  + +S   +  + AEAQ+ ++V  +L
Sbjct:   30 AVADKIKLSLSLPHQAIYKSQDVVQVNIPAVSGEMGVLANHVPSIEQLKPGLVEVIEESGSNKQYFLSGGFAVVQPGSKLSINAVEGYALEDFSAEAVRAQIAEAQKIVSGGGSQQDIAEAQVELEVLESL 160          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPD_RAT (ATP synthase subunit delta, mitochondrial OS=Rattus norvegicus GN=Atp5d PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  213 PTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSAL 608
            P + P +++  F  P         V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++ +S   ++A E V +D +D    +  L +   +LS A  +  +AE QI ++ + AL
Sbjct:   31 PAAGPGQMSFTFASPTQVFFDGANVRQVDVPTLTGAFGILASHVPTLQVLRPGLVMVHAEDGTTTKYFVSSGSVTVNADSSVQLLAEEVVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQIRIEANEAL 163          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPD_HUMAN (ATP synthase subunit delta, mitochondrial OS=Homo sapiens GN=ATP5D PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.175e-14
Identity = 43/129 (33.33%), Postives = 69/129 (53.49%), Query Frame = 3
Query:  225 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSAL 608
            P++++  F  P     +   V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++ +S   ++A EAV +D +D    +  L +   +L     +  +AE QI ++ + AL
Sbjct:   35 PNQMSFTFASPTQVFFNGANVRQVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEAL 163          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPD_SCHPO (ATP synthase subunit delta, mitochondrial OS=Schizosaccharomyces pombe GN=atp16 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  231 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTK-KYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSAL 608
            KL ++  LPY +      V  V +PA  G+MG+L  HVP I  LKPGV+SV D +  K KYF+S GFA   P++   I   EA  ++    S+  + L +   +++S+   +  AEA + V V  +L
Sbjct:   30 KLVLSMALPYQTIYEKVPVTQVDIPAEDGEMGILKDHVPMIQCLKPGVISVTDESSNKSKYFISGGFAVQQPSNELSITVPEAYKLEDFSSSVANQLLEKHKAEMNSSDEGV-AAEAAVRVSVLESL 155          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPD_CAEEL (ATP synthase subunit delta, mitochondrial OS=Caenorhabditis elegans GN=F58F12.1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 3
Query:  225 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT-KKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSAL 608
            P +L + F  P  +  S   V  V VP   G +GVL  HVPTI  LKPGV+SV     T ++ FVSSG   ++ +    ++A E + +++ID S  +  L +  Q+ S   +++ +AEAQI  +V  AL
Sbjct:   28 PEELRLTFASPDTAVFSNAVVKQVDVPTLAGMVGVLANHVPTIGVLKPGVVSVTTNEGTVQRLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAEL-DAAQRASGEGSEVARAEAQIRAEVAEAL 155          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPE_OLTVI (ATP synthase epsilon chain, chloroplastic OS=Oltmannsiellopsis viridis GN=atpE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.312e-12
Identity = 40/100 (40.00%), Postives = 52/100 (52.00%), Query Frame = 3
Query:  279 KEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA 578
            KEVD +I+P +TGQMGVL  H P I  L  GV+ V    D +   V  GFA +  N +  ++  EA   + IDP   ++  A   Q L  AT   EK EA
Sbjct:   17 KEVDEIILPTNTGQMGVLSNHAPLITALDIGVMLVRTQKDWESVAVMGGFALVKQNQIT-VLVNEAESKETIDPQEAEEAFATAKQTLEQATGQKEKVEA 115          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPE_MAGSA (ATP synthase epsilon chain OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  231 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGND-TKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEA 578
            K+    V P A  L + +VDMV+VP + G  G L  H P I  ++PGV+ +HDG   +   FV+ GFA ++   +  ++A EA+P+ ++   + +       + L  A +D +KA A
Sbjct:    4 KIQFELVSP-AKLLVSSKVDMVVVPGAEGDFGALALHAPMITTVRPGVIDIHDGGKVSSSVFVAGGFAEVNEERIT-VLAEEAIPVGELTAEMAEARKKAAKEALDDAKSDRDKAHA 118          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPE_RHOCS (ATP synthase epsilon chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 35/106 (33.02%), Postives = 65/106 (61.32%), Query Frame = 3
Query:  270 LSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDT---KKYFVSSGFAFIHPNSVADIIAVEAVPIDQI---DPSLVQKGLAEFNQKLSSATTDLEK 569
            L ++ V MV+VP + G  GVLPGH P I  ++PG++ V+  N T   ++ FV+ GFA +  ++   ++A EA  +D +   D + ++K +++  + +  AT+D+E+
Sbjct:   16 LVSQPVAMVVVPGADGLFGVLPGHAPMIVTVRPGIIDVYGDNQTTVSRRIFVAGGFAEV-TDTRCTVLAEEASDLDALLKSDTAALEKQISDLREDIEDATSDVER 120          
The following BLAST results are available for this feature:
BLAST of DN134908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ATPD_NEUCR4.772e-1633.59ATP synthase subunit delta, mitochondrial OS=Neuro... [more]
ATPD_RAT8.139e-1633.83ATP synthase subunit delta, mitochondrial OS=Rattu... [more]
ATPD_HUMAN1.175e-1433.33ATP synthase subunit delta, mitochondrial OS=Homo ... [more]
ATPD_SCHPO1.697e-1336.22ATP synthase subunit delta, mitochondrial OS=Schiz... [more]
ATPD_CAEEL2.216e-1336.43ATP synthase subunit delta, mitochondrial OS=Caeno... [more]
ATPE_OLTVI9.312e-1240.00ATP synthase epsilon chain, chloroplastic OS=Oltma... [more]
ATPE_MAGSA1.216e-1132.48ATP synthase epsilon chain OS=Magnetospirillum mag... [more]
ATPE_RHOCS6.036e-1133.02ATP synthase epsilon chain OS=Rhodospirillum cente... [more]

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Properties
Property NameValue
Genbank descriptionwca03b05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03b05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134908 ID=DN134908; Name=DN134908; organism=Citrus sinensis; type=EST; length=679bp
GGCCGGGGNNNACGCTCTCGCCGAAAATGTTCCGGCAAGCTTCACGCCTC
TTGGCTCGAGCCAGCGCGGTGACAAGGTCTCGCGCCTTCTCATCGGAGGT
CCCAGCCACGCCCGCCGTTGATTCGACTTTCGTTGAGTCATGGAAGAAAG
TGAATCCAATCATGGAGCCGCCAAAGACTCCATCGGTTTACATGACCCCT
CGCCCACAAACCCCCACTTCAATCCCCTCCAAGCTCACCGTCAACTTCGT
CCTTCCCTACGCCTCTGAGCTCTCCGCTAAGGAGGTCGATATGGTTATAG
TTCCAGCATCAACTGGGCAAATGGGTGTTCTGCCTGGGCATGTACCTACA
ATTGCAGAACTAAAGCCTGGAGTCTTATCGGTTCATGATGGTAATGATAC
CAAGAAATACTTTGTTAGCAGTGGGTTTGCATTTATCCATCCAAACTCTG
TTGCAGACATAATCGCTGTTGAGGCTGTGCCAATCGACCAAATTGACCCC
AGCTTGGTCCAGAAGGGCCTTGCAGAGTTCAACCAGAAGCTTAGTTCAGC
TACAACTGACCTGGAGAAAGCTGAAGCTCAGATAGGTGTTGATGTTCACA
GTGCACTCAACTCTGCTCTCACAGGCTAATTTTCTTCTACCTCCANNTTT
TTCTCATTTTGCTTTCTATTTTTGAGTTG
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