DN134900

Overview
NameDN134900
Unique NameDN134900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13776 contig Csv1_Contig13776:66..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.164e-22
Identity = 53/145 (36.55%), Postives = 87/145 (60.00%), Query Frame = 1
Query:  139 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            F N L+SL  K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+
Sbjct:    5 FGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.164e-22
Identity = 51/145 (35.17%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  139 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            F N  + LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L +  L    LL+  NK D P A++   +TD++GL S+
Sbjct:    5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.164e-22
Identity = 51/145 (35.17%), Postives = 85/145 (58.62%), Query Frame = 1
Query:  139 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            F N  + LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L +  L    LL+  NK D P A++   +TD++GL S+
Sbjct:    5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 2.826e-22
Identity = 52/141 (36.88%), Postives = 85/141 (60.28%), Query Frame = 1
Query:  151 LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            L  LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +LN+  L    LLV  NK D P A++   +TD++GL S+
Sbjct:    9 LDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.691e-22
Identity = 55/136 (40.44%), Postives = 89/136 (65.44%), Query Frame = 1
Query:  163 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR-AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLK 567
            FFK+E ++ +IGL NAGKT+L++++ TG      IPT+  N    T GNV  K +DLGGQ   R +W++Y   + + IV++VD++D +++  S+SE+HD+L    LS  PLL+LG+K D  G  +++ L D + ++
Sbjct:   16 FFKKEAKIVIIGLGNAGKTTLLHLLVTGSLKSH-IPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIHDILGDEHLSQSPLLILGSKCDAKGHHNRENLIDLLDIR 150          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 4.820e-22
Identity = 52/140 (37.14%), Postives = 83/140 (59.29%), Query Frame = 1
Query:  160 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD--PDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            LF K+E+ + ++GL  AGKT+++  +  G      +PT+GFN+  V   N+   +WD+GGQ   R +W  Y +   A++YV+D+AD  P  +  +++ELH LL +  L    LLV  NK D P A+S   LT+ +GL+ +
Sbjct:   12 LFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTT-VPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQEL 150          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 4.820e-22
Identity = 55/151 (36.42%), Postives = 87/151 (57.62%), Query Frame = 1
Query:  121 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            MGL+ + L    +LF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ R RS+W  Y R    +++VVD+ D   +  +R  +  +LN+  L     LV  NK D P A+S   +T+++GL SI
Sbjct:    1 MGLFASKL--FSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSI 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 6.295e-22
Identity = 54/151 (35.76%), Postives = 87/151 (57.62%), Query Frame = 1
Query:  121 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            MGL+ + L    +LF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ R RS+W  Y R    +++V+D+ D   +  +R  +  +LN+  L     LV  NK D P A+S   +T+++GL SI
Sbjct:    1 MGLYASKL--FSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSI 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL11_MOUSE (ADP-ribosylation factor-like protein 11 OS=Mus musculus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.222e-22
Identity = 50/134 (37.31%), Postives = 86/134 (64.18%), Query Frame = 1
Query:  169 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV-TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLK 567
            K E ++ ++GL +AGKT+++  +  G    D +PTVGFN+  +   G+V++ LWD+GGQ + R+ W+ Y   +  +VYV+D+ D   L  + +EL ++L  P+++G+P LVL NK + PGAL    + + +GL+
Sbjct:   10 KAEAQVVMMGLDSAGKTTILYKLK-GNQLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELKEVLEDPNMAGVPFLVLANKQEAPGALPLLEIRNRLGLE 142          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 8.222e-22
Identity = 51/138 (36.96%), Postives = 83/138 (60.14%), Query Frame = 1
Query:  160 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D D ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+
Sbjct:   12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148          
The following BLAST results are available for this feature:
BLAST of DN134900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
ARF3_BOVIN2.164e-2236.55ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF1_LOCMI2.164e-2235.17ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME2.164e-2235.17ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF_DUGJA2.826e-2236.88ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
SAR1B_DICDI3.691e-2240.44GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
ARF_GIALA4.820e-2237.14ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF1_YEAST4.820e-2236.42ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF2_YEAST6.295e-2235.76ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARL11_MOUSE8.222e-2237.31ADP-ribosylation factor-like protein 11 OS=Mus mus... [more]
ARF1_SOLTU8.222e-2236.96ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]

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Properties
Property NameValue
Genbank descriptionwca03a07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03a07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134900 ID=DN134900; Name=DN134900; organism=Citrus sinensis; type=EST; length=609bp
TACGGTAAATCAGTAGACGCAAGCGAAGGAGGAAGCTTCATCAGTGGGGG
GTCAATTCAAGGCTTAAATCTCAATTGGTTTCTGATTCTGTGATCATCGT
CATCACCATCATCATTATCAATGGGATTGTGGGAAGCTTTTCTGAATTGG
CTCCGCAGCCTCTTTTTTAAACAGGAAATGGAGCTGTCCCTGATTGGACT
TCAAAATGCTGGAAAGACCTCACTTGTAAATGTTGTTGCTACTGGTGGAT
ATAGCGAGGACATGATCCCTACGGTCGGATTCAACATGAGGAAAGTGACA
AAAGGAAATGTTACAATTAAGCTTTGGGATCTTGGAGGTCAACCTAGATT
CCGCAGTATGTGGGAGCGGTATTGCCGGGCAGTTTCTGCTATTGTTTACG
TGGTGGATGCTGCTGATCCTGACAACCTGAGCATTTCAAGAAGTGAACTT
CATGATTTGCTGAACAAACCCTCACTTAGTGGTATCCCTTTGCTGGTGCT
AGGGAACAAGGTTGACAAACCCGGAGCTCTATCTAAACAGGCTTTAACTG
ATGAAATGGGACTAAAATCCATCACCGACNNNNNAGTTTGCTGCTTTATG
ATCTCATGC
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