DN134900

Overview
NameDN134900
Unique NameDN134900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13776 contig Csv1_Contig13776:66..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.074e-21
Identity = 52/146 (35.62%), Postives = 84/146 (57.53%), Query Frame = 1
Query:  136 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            +F     +LF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y R    I++VVD+ D   ++ +R  L  +LN+  +    LLV  NK D P A+S   +T+++GL SI
Sbjct:    4 SFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSI 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.074e-21
Identity = 52/145 (35.86%), Postives = 86/145 (59.31%), Query Frame = 1
Query:  139 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            F    +SLF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+
Sbjct:    5 FEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.074e-21
Identity = 52/145 (35.86%), Postives = 86/145 (59.31%), Query Frame = 1
Query:  139 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            F    +SLF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+
Sbjct:    5 FEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.074e-21
Identity = 52/145 (35.86%), Postives = 86/145 (59.31%), Query Frame = 1
Query:  139 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            F    +SLF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+
Sbjct:    5 FEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.832e-21
Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  139 FLNWLRSLFFKQ-EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSIT 576
            FL  L+ +  K+ EM + L+GL NAGKT+++     G   + + PT+GFN++ +     T+ +WD+GGQ   RS W  Y  +   +V+VVD+AD   L     EL  LL +  L+G  LLVL NK D PGALS   + + + L+ IT
Sbjct:    3 FLTVLKKMRQKEREMRILLLGLDNAGKTTILKRF-NGEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLEDIT 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.832e-21
Identity = 54/147 (36.73%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  139 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            F +   SLF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGGQ   R  W  Y     A++YVVD+ D D + IS+SEL  +L +  L    L+V  NK D   A++   + + +GL ++ D
Sbjct:    5 FSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKD 150          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.832e-21
Identity = 50/140 (35.71%), Postives = 78/140 (55.71%), Query Frame = 1
Query:  160 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            +F  +EM + + GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y      +++VVD  D D +  +R ELH ++N   +    +L+  NK D P A+    + +++GL  I D
Sbjct:    8 IFGNKEMRILMRGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD 146          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.392e-21
Identity = 54/147 (36.73%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  139 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            F +   SLF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGGQ   R  W  Y     A++YVVD+ D D + IS+SEL  +L +  L    L+V  NK D   A++   + + +GL ++ D
Sbjct:    5 FSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKD 150          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.392e-21
Identity = 52/153 (33.99%), Postives = 89/153 (58.17%), Query Frame = 1
Query:  121 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            MGL+ + L     LF K+++ + ++GL  AGKT+++  V  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y      +++VVD+ D + +  +R ELH ++N+  L    +LV  NK D P A+S   +T+++ L +I +
Sbjct:    1 MGLYVSRL--FNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTT-IPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRE 150          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.124e-21
Identity = 54/147 (36.73%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  139 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            F +   SLF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGGQ   R  W  Y     A++YVVD+ D D + IS+SEL  +L +  L    L+V  NK D   A++   + + +GL ++ D
Sbjct:    5 FSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKD 150          
The following BLAST results are available for this feature:
BLAST of DN134900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
ARF_ASHGO1.074e-2135.62ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF2_RAT1.074e-2135.86ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE1.074e-2135.86ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_BOVIN1.074e-2135.86ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]
ARL2_DROME1.832e-2139.46ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARL1_HUMAN1.832e-2136.73ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARF6_XENLA1.832e-2135.71ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARL1_BOVIN2.392e-2136.73ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARF1_PLAFA2.392e-2133.99ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARL1_RAT3.124e-2136.73ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]

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Properties
Property NameValue
Genbank descriptionwca03a07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03a07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134900 ID=DN134900; Name=DN134900; organism=Citrus sinensis; type=EST; length=609bp
TACGGTAAATCAGTAGACGCAAGCGAAGGAGGAAGCTTCATCAGTGGGGG
GTCAATTCAAGGCTTAAATCTCAATTGGTTTCTGATTCTGTGATCATCGT
CATCACCATCATCATTATCAATGGGATTGTGGGAAGCTTTTCTGAATTGG
CTCCGCAGCCTCTTTTTTAAACAGGAAATGGAGCTGTCCCTGATTGGACT
TCAAAATGCTGGAAAGACCTCACTTGTAAATGTTGTTGCTACTGGTGGAT
ATAGCGAGGACATGATCCCTACGGTCGGATTCAACATGAGGAAAGTGACA
AAAGGAAATGTTACAATTAAGCTTTGGGATCTTGGAGGTCAACCTAGATT
CCGCAGTATGTGGGAGCGGTATTGCCGGGCAGTTTCTGCTATTGTTTACG
TGGTGGATGCTGCTGATCCTGACAACCTGAGCATTTCAAGAAGTGAACTT
CATGATTTGCTGAACAAACCCTCACTTAGTGGTATCCCTTTGCTGGTGCT
AGGGAACAAGGTTGACAAACCCGGAGCTCTATCTAAACAGGCTTTAACTG
ATGAAATGGGACTAAAATCCATCACCGACNNNNNAGTTTGCTGCTTTATG
ATCTCATGC
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