DN134900

Overview
NameDN134900
Unique NameDN134900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13776 contig Csv1_Contig13776:66..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 49/141 (34.75%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  151 LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            L  LF K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D D ++ +  EL ++L +  L    LLV  NK D P A++   LTD++ L  +
Sbjct:    9 LTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLRLNQL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 51/153 (33.33%), Postives = 88/153 (57.52%), Query Frame = 1
Query:  121 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            MGL+ + L     LF K+++ + ++GL  AGKT+++  V  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y      +++VVD+ D + +  +R  LH ++N+  L    +LV  NK D P A+S   +T+++ L +I +
Sbjct:    1 MGLYVSRL--FNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTT-IPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREGLHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRE 150          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL2_CAEBR (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 51/135 (37.78%), Postives = 83/135 (61.48%), Query Frame = 1
Query:  169 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            ++EM + ++GL NAGKT+L+        ++ + PT+GF+++ V   +  + LWD+GGQ   RS W+ Y  +  A+++VVD++D + L+    EL  LL +  LSG  LLVL NK D PGA+   ++   + L+SI
Sbjct:   14 EREMRILILGLDNAGKTTLMKKFLDEP-TDTIEPTLGFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSGASLLVLANKSDLPGAIDVNSIAQVLELQSI 147          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 48/138 (34.78%), Postives = 80/138 (57.97%), Query Frame = 1
Query:  160 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            +F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D + +  S  EL  +L +  L    LLV  NK D P A+    LTD++GL+++
Sbjct:   12 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQAL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL11_BOVIN (ADP-ribosylation factor-like protein 11 OS=Bos taurus GN=ARL11 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 51/135 (37.78%), Postives = 88/135 (65.19%), Query Frame = 1
Query:  169 KQEMELSLIGLQNAGKTSLVNVVATGGYS-EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLK 567
            + E ++ ++GL +AGKT+L+  +   GY   + +PTVGFN+  + + G+V++ LWD+GGQ + R+ W+ +      +VYV+D+ D   L  + +EL ++L+ PS++ +PLLVL NK + P ALS   + D +GL+
Sbjct:   10 RAEAQVVMMGLDSAGKTTLLYRLK--GYQLVETLPTVGFNVEPLEEPGHVSLTLWDVGGQSQLRASWKDHLEGTDILVYVLDSTDEARLPEAVAELREVLDDPSVASVPLLVLANKQEVPQALSLPEIRDRLGLQ 142          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 51/149 (34.23%), Postives = 90/149 (60.40%), Query Frame = 1
Query:  136 AFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            +F + + SLF  K++  + +IGL  AGK++L+  +  G      IPT+GFN+  +   N+++ +WD+GGQ + R++W+ Y    +AI++VVD+ D + +   + E+ +LL +  L GI +LVL NK D   A++   + + + L SI D
Sbjct:   11 SFFSNIFSLFEGKKDTRILMIGLDGAGKSTLLFKLKLGDVVLT-IPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKD 158          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 49/149 (32.89%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  136 AFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            +F + + SLF  K++  + +IGL  AGK++L+  +  G      +PT+GFN+  +   N+++ +WD+GGQ + R++W+ Y    +AI++VVD+ D + +   + E+  LL +  L GI +L+  NK D   A++   + D + L SI D
Sbjct:   11 SFFSNIFSLFEGKKQTRILMIGLDGAGKSTLLYKLKLGDIVST-VPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKD 158          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 48/138 (34.78%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  160 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            +F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D + +  S  EL  +L +  L    LLV  NK D P A+    LTD++GL+ +
Sbjct:   12 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 48/138 (34.78%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  160 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            +F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D + +  S  EL  +L +  L    LLV  NK D P A+    LTD++GL+ +
Sbjct:   12 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 48/138 (34.78%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  160 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            +F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D + +  S  EL  +L +  L    LLV  NK D P A+    LTD++GL+ +
Sbjct:   12 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHL 148          
The following BLAST results are available for this feature:
BLAST of DN134900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
ARF2_DROME1.551e-2034.75ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF1_PLAFO1.551e-2033.33ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARL2_CAEBR2.025e-2037.78ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARF5_CHICK2.025e-2034.78ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARL11_BOVIN2.645e-2037.78ADP-ribosylation factor-like protein 11 OS=Bos tau... [more]
ARFK_DICDI2.645e-2034.23ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARFH_DICDI2.645e-2032.89ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARF5_RAT2.645e-2034.78ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE2.645e-2034.78ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN2.645e-2034.78ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]

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Properties
Property NameValue
Genbank descriptionwca03a07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03a07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134900 ID=DN134900; Name=DN134900; organism=Citrus sinensis; type=EST; length=609bp
TACGGTAAATCAGTAGACGCAAGCGAAGGAGGAAGCTTCATCAGTGGGGG
GTCAATTCAAGGCTTAAATCTCAATTGGTTTCTGATTCTGTGATCATCGT
CATCACCATCATCATTATCAATGGGATTGTGGGAAGCTTTTCTGAATTGG
CTCCGCAGCCTCTTTTTTAAACAGGAAATGGAGCTGTCCCTGATTGGACT
TCAAAATGCTGGAAAGACCTCACTTGTAAATGTTGTTGCTACTGGTGGAT
ATAGCGAGGACATGATCCCTACGGTCGGATTCAACATGAGGAAAGTGACA
AAAGGAAATGTTACAATTAAGCTTTGGGATCTTGGAGGTCAACCTAGATT
CCGCAGTATGTGGGAGCGGTATTGCCGGGCAGTTTCTGCTATTGTTTACG
TGGTGGATGCTGCTGATCCTGACAACCTGAGCATTTCAAGAAGTGAACTT
CATGATTTGCTGAACAAACCCTCACTTAGTGGTATCCCTTTGCTGGTGCT
AGGGAACAAGGTTGACAAACCCGGAGCTCTATCTAAACAGGCTTTAACTG
ATGAAATGGGACTAAAATCCATCACCGACNNNNNAGTTTGCTGCTTTATG
ATCTCATGC
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