DN134900

Overview
NameDN134900
Unique NameDN134900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13776 contig Csv1_Contig13776:66..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: AR13B_MOUSE (ADP-ribosylation factor-like protein 13B OS=Mus musculus GN=Arl13b PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 47/144 (32.64%), Postives = 85/144 (59.03%), Query Frame = 1
Query:  172 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITDXXVCCFMI 603
            +++ L ++GL NAGKT+    +  G + ED+ PTVGF+   + +G   + ++DLGG  R R +W+ Y      +++VVD++D + +  ++  + ++L  P +SG P+LVL NK DK GAL +  + + + L+ + +   C   I
Sbjct:   20 RKVTLVMVGLDNAGKTATAKGIQ-GEHPEDVAPTVGFSKIDLRQGKFQVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQI 162          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 47/138 (34.06%), Postives = 80/138 (57.97%), Query Frame = 1
Query:  160 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            LF K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D + +     EL  +L +  L    LL+  NK D P A++   +TD++GL+S+
Sbjct:   12 LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSL 148          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 49/135 (36.30%), Postives = 79/135 (58.52%), Query Frame = 1
Query:  169 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            ++E+ L ++GL NAGKT+++     G   + + PT+GFN++ +      + +WD+GGQ   RS W  Y  +   +++VVD+AD   +   + EL  LL +  L+G  LL+  NK D PGALS  A+ + + L SI
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI 147          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL6_MOUSE (ADP-ribosylation factor-like protein 6 OS=Mus musculus GN=Arl6 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 45/140 (32.14%), Postives = 90/140 (64.29%), Query Frame = 1
Query:  169 KQEMELSLIGLQNAGKTSLVNVVA-TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS--GIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            K+E+ +  +GL N+GKT+++N +  +   S+D++PT+GF++ K    +++  ++D+ GQ R+R++WE Y +   AI++V+D++D   + +++ EL  LLN P +    IP+L   NK+D   +++   ++  + L+SI D
Sbjct:   15 KKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKDGQAIIFVIDSSDKLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDSVTSVKVSQLLCLESIKD 154          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL4D_BOVIN (ADP-ribosylation factor-like protein 4D OS=Bos taurus GN=ARL4D PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 50/139 (35.97%), Postives = 80/139 (57.55%), Query Frame = 1
Query:  172 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            Q + + +IGL +AGKTSL+  +    + +  IPT GFN  K+         +T ++WD+GGQ + R +W  Y R    +V+VVDAA+ + L  ++ ELH +       G+P+LVL NK D+PGALS   +   + ++ +
Sbjct:   19 QALHVVVIGLDSAGKTSLLYRLKFKEFVQS-IPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVREL 156          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL3_XENLA (ADP-ribosylation factor-like protein 3 OS=Xenopus laevis GN=arl3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 48/136 (35.29%), Postives = 77/136 (56.62%), Query Frame = 1
Query:  172 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            QE+ + L+GL NAGKT+L+  +A+   S  + PT GFN++ V      + +WD+GGQ + R  W  Y      ++YV+D+AD      +  EL +LL++  LSG+P+L+  NK D   A     + + + L +I D
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD 150          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 49/147 (33.33%), Postives = 91/147 (61.90%), Query Frame = 1
Query:  127 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGL 564
            ++  F + L+ L  +K+  +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD + L  S+ EL  L+   +++ +P+L+LGNK+D+P A+S++ L +  GL
Sbjct:    8 IYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL4D_PONAB (ADP-ribosylation factor-like protein 4D OS=Pongo abelii GN=ARL4D PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 49/139 (35.25%), Postives = 80/139 (57.55%), Query Frame = 1
Query:  172 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            Q + + +IGL +AGKTSL+  +    + +  +PT GFN  K+         +T ++WD+GGQ + R +W  Y R    +V+VVDAA+ + L  ++ ELH +       G+P+LVL NK D+PGALS   +   + ++ +
Sbjct:   20 QALHVVVIGLDSAGKTSLLYRLKFKEFVQS-VPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVREL 157          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL4D_HUMAN (ADP-ribosylation factor-like protein 4D OS=Homo sapiens GN=ARL4D PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 49/139 (35.25%), Postives = 80/139 (57.55%), Query Frame = 1
Query:  172 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSI 573
            Q + + +IGL +AGKTSL+  +    + +  +PT GFN  K+         +T ++WD+GGQ + R +W  Y R    +V+VVDAA+ + L  ++ ELH +       G+P+LVL NK D+PGALS   +   + ++ +
Sbjct:   20 QALHVVVIGLDSAGKTSLLYRLKFKEFVQS-VPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVREL 157          
BLAST of DN134900 vs. ExPASy Swiss-Prot
Match: ARL3_TAEGU (ADP-ribosylation factor-like protein 3 OS=Taeniopygia guttata GN=ARL3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 48/136 (35.29%), Postives = 77/136 (56.62%), Query Frame = 1
Query:  172 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKVDKPGALSKQALTDEMGLKSITD 579
            QE+ + L+GL NAGKT+L+  +A+   S  + PT GFN++ V      + +WD+GGQ + R  W  Y      ++YV+D+AD      +  EL +LL++  LSG+P+L+  NK D   A     + + + L +I D
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD 150          
The following BLAST results are available for this feature:
BLAST of DN134900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
AR13B_MOUSE2.645e-2032.64ADP-ribosylation factor-like protein 13B OS=Mus mu... [more]
ARF4_BOVIN3.454e-2034.06ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
ARL2_MOUSE4.512e-2036.30ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]
ARL6_MOUSE5.892e-2032.14ADP-ribosylation factor-like protein 6 OS=Mus musc... [more]
ARL4D_BOVIN5.892e-2035.97ADP-ribosylation factor-like protein 4D OS=Bos tau... [more]
ARL3_XENLA5.892e-2035.29ADP-ribosylation factor-like protein 3 OS=Xenopus ... [more]
SAR1B_MOUSE7.696e-2033.33GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
ARL4D_PONAB7.696e-2035.25ADP-ribosylation factor-like protein 4D OS=Pongo a... [more]
ARL4D_HUMAN7.696e-2035.25ADP-ribosylation factor-like protein 4D OS=Homo sa... [more]
ARL3_TAEGU7.696e-2035.29ADP-ribosylation factor-like protein 3 OS=Taeniopy... [more]

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Properties
Property NameValue
Genbank descriptionwca03a07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03a07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134900 ID=DN134900; Name=DN134900; organism=Citrus sinensis; type=EST; length=609bp
TACGGTAAATCAGTAGACGCAAGCGAAGGAGGAAGCTTCATCAGTGGGGG
GTCAATTCAAGGCTTAAATCTCAATTGGTTTCTGATTCTGTGATCATCGT
CATCACCATCATCATTATCAATGGGATTGTGGGAAGCTTTTCTGAATTGG
CTCCGCAGCCTCTTTTTTAAACAGGAAATGGAGCTGTCCCTGATTGGACT
TCAAAATGCTGGAAAGACCTCACTTGTAAATGTTGTTGCTACTGGTGGAT
ATAGCGAGGACATGATCCCTACGGTCGGATTCAACATGAGGAAAGTGACA
AAAGGAAATGTTACAATTAAGCTTTGGGATCTTGGAGGTCAACCTAGATT
CCGCAGTATGTGGGAGCGGTATTGCCGGGCAGTTTCTGCTATTGTTTACG
TGGTGGATGCTGCTGATCCTGACAACCTGAGCATTTCAAGAAGTGAACTT
CATGATTTGCTGAACAAACCCTCACTTAGTGGTATCCCTTTGCTGGTGCT
AGGGAACAAGGTTGACAAACCCGGAGCTCTATCTAAACAGGCTTTAACTG
ATGAAATGGGACTAAAATCCATCACCGACNNNNNAGTTTGCTGCTTTATG
ATCTCATGC
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