DN134883 | Citrus Genome Database

Overview


Name	DN134883
Unique Name	DN134883
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	411

Libraries


Library Name	Type
Developing fruit albedo at 80 DAFB in Vulnus5 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN134883 vs. ExPASy Swiss-Prot
Match: PSBI_LACSA (Photosystem II reaction center protein I OS=Lactuca sativa GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3

Query:   48 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 155
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134883 vs. ExPASy Swiss-Prot
Match: PSBI_IPOPU (Photosystem II reaction center protein I OS=Ipomoea purpurea GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3

Query:   48 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 155
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134883 vs. ExPASy Swiss-Prot
Match: PSBI_ILLOL (Photosystem II reaction center protein I OS=Illicium oligandrum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3

Query:   48 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 155
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134883 vs. ExPASy Swiss-Prot
Match: PSBI_HORVU (Photosystem II reaction center protein I OS=Hordeum vulgare GN=psbI PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3

Query:   48 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 155
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134883 vs. ExPASy Swiss-Prot
Match: PSBI_HELAN (Photosystem II reaction center protein I OS=Helianthus annuus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3

Query:   48 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 155
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134883 vs. ExPASy Swiss-Prot
Match: PSBI_GUIAB (Photosystem II reaction center protein I OS=Guizotia abyssinica GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3

Query:   48 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 155
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134883 vs. ExPASy Swiss-Prot
Match: PSBI_GOSHI (Photosystem II reaction center protein I OS=Gossypium hirsutum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3

Query:   48 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 155
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134883 vs. ExPASy Swiss-Prot
Match: PSBI_GOSBA (Photosystem II reaction center protein I OS=Gossypium barbadense GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3

Query:   48 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 155
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134883 vs. ExPASy Swiss-Prot
Match: PSBI_FAGEA (Photosystem II reaction center protein I OS=Fagopyrum esculentum subsp. ancestrale GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3

Query:   48 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 155
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134883 vs. ExPASy Swiss-Prot
Match: PSBI_EUCGG (Photosystem II reaction center protein I OS=Eucalyptus globulus subsp. globulus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3

Query:   48 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 155
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of DN134883 vs. ExPASy Swiss-Prot

BLAST of DN134883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112


Match Name	E-value	Identity	Description
PSBI_LACSA	7.274e-14	100.00	Photosystem II reaction center protein I OS=Lactuc...	[more]
PSBI_IPOPU	7.274e-14	100.00	Photosystem II reaction center protein I OS=Ipomoe...	[more]
PSBI_ILLOL	7.274e-14	100.00	Photosystem II reaction center protein I OS=Illici...	[more]
PSBI_HORVU	7.274e-14	100.00	Photosystem II reaction center protein I OS=Hordeu...	[more]
PSBI_HELAN	7.274e-14	100.00	Photosystem II reaction center protein I OS=Helian...	[more]
PSBI_GUIAB	7.274e-14	100.00	Photosystem II reaction center protein I OS=Guizot...	[more]
PSBI_GOSHI	7.274e-14	100.00	Photosystem II reaction center protein I OS=Gossyp...	[more]
PSBI_GOSBA	7.274e-14	100.00	Photosystem II reaction center protein I OS=Gossyp...	[more]
PSBI_FAGEA	7.274e-14	100.00	Photosystem II reaction center protein I OS=Fagopy...	[more]
PSBI_EUCGG	7.274e-14	100.00	Photosystem II reaction center protein I OS=Eucaly...	[more]

Pages

Properties


Property Name	Value
Genbank description	wca02g01 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02g01 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN134883 ID=DN134883; Name=DN134883; organism=Citrus sinensis; type=EST; length=411bp
CTATTCTCTTTTTCCTTTCCCCAAAAACCTGATTTGGAGATTGTGTAATG
CTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCTTTGTTTCGCT
CTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAATCCCGGACGCG
AAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAACGTTCTTA
GGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAGTGTTCGCT
AAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGAAAGAGAGG
GATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTAGCAATCCGAC
GCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA