DN134865

Overview
NameDN134865
Unique NameDN134865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134865 vs. ExPASy Swiss-Prot
Match: EFTU_MYCTU (Elongation factor Tu OS=Mycobacterium tuberculosis GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 65/162 (40.12%), Postives = 90/162 (55.56%), Query Frame = 1
Query:   52 MGKEKF-----HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQAREHALLAFTLGVKQMICCCNKMDA 522
            M K KF     H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          Q REH LLA  +GV  ++   NK DA
Sbjct:    1 MAKAKFQRTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of DN134865 vs. ExPASy Swiss-Prot
Match: EFTU_MYCTA (Elongation factor Tu OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 65/162 (40.12%), Postives = 90/162 (55.56%), Query Frame = 1
Query:   52 MGKEKF-----HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQAREHALLAFTLGVKQMICCCNKMDA 522
            M K KF     H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          Q REH LLA  +GV  ++   NK DA
Sbjct:    1 MAKAKFQRTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of DN134865 vs. ExPASy Swiss-Prot
Match: EFTU_MYCS2 (Elongation factor Tu OS=Mycobacterium smegmatis GN=tuf PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 65/163 (39.88%), Postives = 92/163 (56.44%), Query Frame = 1
Query:   52 MGKEKF-----HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQAREHALLAFTLGVKQMICCCNKMDA 522
            M K KF     H+NI  IGHVD GK+T T         I K + ++F     ++N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          Q REH LLA  +GV  ++   NK DA
Sbjct:    1 MAKAKFERTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNESRAFDQ---IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDA 142          
BLAST of DN134865 vs. ExPASy Swiss-Prot
Match: EFTU_MYCMM (Elongation factor Tu OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 65/163 (39.88%), Postives = 92/163 (56.44%), Query Frame = 1
Query:   52 MGKEKF-----HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQAREHALLAFTLGVKQMICCCNKMDA 522
            M K KF     H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          Q REH LLA  +GV  ++   NK DA
Sbjct:    1 MAKAKFQRTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDA 142          
BLAST of DN134865 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBT (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 65/162 (40.12%), Postives = 90/162 (55.56%), Query Frame = 1
Query:   52 MGKEKF-----HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQAREHALLAFTLGVKQMICCCNKMDA 522
            M K KF     H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          Q REH LLA  +GV  ++   NK DA
Sbjct:    1 MAKAKFQRTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of DN134865 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBP (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 65/162 (40.12%), Postives = 90/162 (55.56%), Query Frame = 1
Query:   52 MGKEKF-----HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQAREHALLAFTLGVKQMICCCNKMDA 522
            M K KF     H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          Q REH LLA  +GV  ++   NK DA
Sbjct:    1 MAKAKFQRTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of DN134865 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBO (Elongation factor Tu OS=Mycobacterium bovis GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 65/162 (40.12%), Postives = 90/162 (55.56%), Query Frame = 1
Query:   52 MGKEKF-----HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQAREHALLAFTLGVKQMICCCNKMDA 522
            M K KF     H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          Q REH LLA  +GV  ++   NK DA
Sbjct:    1 MAKAKFQRTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of DN134865 vs. ExPASy Swiss-Prot
Match: EFTU_GUITH (Elongation factor Tu, chloroplastic OS=Guillardia theta GN=tufA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 67/196 (34.18%), Postives = 97/196 (49.49%), Query Frame = 1
Query:   52 MGKEKF-----HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQAREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV 624
            M ++KF     H+NI  IGHVD GK+T T  +   L               ++   +S K+  + D    ER RGITI+ A  ++ET K+Y   +D PGH D++KNMITG +Q D A+L+  +  G          Q REH LLA  +GV  ++   NK D       +   + +  EV   L+K  +   +IPFV
Sbjct:    1 MARDKFERSKPHVNIGTIGHVDHGKTTLTAAISATL---------------SQYTGKSKKFDEI-DSAPEERARGITINTAHVEYETDKWYYAHVDCPGHADYVKNMITGAAQMDGAILVCSAANGPMP-------QTREHILLAKQVGVPYIVVFLNKADMVD---DEELLELVQLEVQELLEKYDFPGSEIPFV 170          
BLAST of DN134865 vs. ExPASy Swiss-Prot
Match: EFTU_FUSNN (Elongation factor Tu OS=Fusobacterium nucleatum subsp. nucleatum GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 66/196 (33.67%), Postives = 96/196 (48.98%), Query Frame = 1
Query:   52 MGKEKF-----HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQAREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV 624
            M KEK+     H+NI  IGHVD GK+TTT              I +   +    +K  F     +D    E+ERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          Q REH LL+  +GV  ++   NK D       +   + +  EV   L + G+  D IP +
Sbjct:    1 MAKEKYERSKPHVNIGTIGHVDHGKTTTTA------------AISKVLSDKGWASKVDFDQ---IDAAPEEKERGITINTAHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSRQVGVPYIVVYLNKSDMVE---DEELLELVEMEVRELLTEYGFPGDDIPVI 171          
BLAST of DN134865 vs. ExPASy Swiss-Prot
Match: EFTU_FERNB (Elongation factor Tu OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 69/203 (33.99%), Postives = 95/203 (46.80%), Query Frame = 1
Query:   52 MGKEKF-----HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAW-------VLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQAREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV 624
            M KEKF     H+N+  IGH+D GK+T T                      A + K    + W       ++DK   ER RGITI+I   +++T K +   ID PGH D+IKNMITG +Q D A+L++ +T G          Q REH LLA  + V  MI   NK+D           D +  EV   L K  +  D++P +
Sbjct:    1 MAKEKFVRTKPHMNVGTIGHIDHGKTTLT----------------------AAITKYCSLFGWADYTPYEMIDKAPEERARGITINITHVEYQTEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMIVFINKVDMVD---DPELVDLVEMEVRDLLSKYEFPGDELPVI 171          
The following BLAST results are available for this feature:
BLAST of DN134865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MYCTU1.805e-2040.12Elongation factor Tu OS=Mycobacterium tuberculosis... [more]
EFTU_MYCTA1.805e-2040.12Elongation factor Tu OS=Mycobacterium tuberculosis... [more]
EFTU_MYCS21.805e-2039.88Elongation factor Tu OS=Mycobacterium smegmatis GN... [more]
EFTU_MYCMM1.805e-2039.88Elongation factor Tu OS=Mycobacterium marinum (str... [more]
EFTU_MYCBT1.805e-2040.12Elongation factor Tu OS=Mycobacterium bovis (strai... [more]
EFTU_MYCBP1.805e-2040.12Elongation factor Tu OS=Mycobacterium bovis (strai... [more]
EFTU_MYCBO1.805e-2040.12Elongation factor Tu OS=Mycobacterium bovis GN=tuf... [more]
EFTU_GUITH1.805e-2034.18Elongation factor Tu, chloroplastic OS=Guillardia ... [more]
EFTU_FUSNN1.805e-2033.67Elongation factor Tu OS=Fusobacterium nucleatum su... [more]
EFTU_FERNB1.805e-2033.99Elongation factor Tu OS=Fervidobacterium nodosum (... [more]

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Properties
Property NameValue
Genbank descriptionwca02e01 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02e01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134865 ID=DN134865; Name=DN134865; organism=Citrus sinensis; type=EST; length=664bp
CGGCCGGGGGGTTTTAGCAGAGCTCTTTCAGTTTTAAGCAAATACTTTAT
CATGGGCAAGGAGAAGTTTCATATCAATATTGTGGTTATTGGCCATGTCG
ACTCTGGGAAGTCAACCACCACCGGTCACTTGATCTACAAGCTTGGAGGT
ATTGACAAGCGTGTGATTGAGCGGTTTGAGAAGGAAGCTGCTGAGATGAA
CAAGAGATCATTCAAGTACGCATGGGTGCTTGACAAGCTCAAGGCTGAGC
GTGAGCGTGGTATCACCATTGATATTGCTTTGTGGAAGTTCGAGACCACA
AAGTACTACTGCACTGTCATCGATGCCCCCGGACATCGTGACTTTATTAA
GAACATGATTACCGGTACTTCTCAGGCTGATTGTGCTGTCCTTATCATCG
ACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGGCAGGCC
AGAGAGCACGCTCTACTTGCTTTCACCCTTGGTGTGAAGCAAATGATTTG
TTGCTGTAACAAGATGGATGCCACCACTCCCAAGTATTCAAAGGCAAGAT
ATGATGAAATTGTTAAGGAAGTCTCTTCCTACTTGAAGAAGGTTGGCTAC
AACCCAGATAAGATTCCATTTGTCCCAATCTCTGGATTTGAGGGTGATAA
CATGATTGANNGGT
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