DN134859 | Citrus Genome Database

Overview


Name	DN134859
Unique Name	DN134859
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	413

Libraries


Library Name	Type
Developing fruit albedo at 80 DAFB in Vulnus5 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6283	contig	Csv1_Contig6283:895..1308.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_AETGR (Photosystem II reaction center protein I OS=Aethionema grandiflora GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_AETCO (Photosystem II reaction center protein I OS=Aethionema cordifolium GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_ACOCL (Photosystem II reaction center protein I OS=Acorus calamus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_ACOAM (Photosystem II reaction center protein I OS=Acorus americanus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_SILLA (Photosystem II reaction center protein I OS=Silene latifolia GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36

[Close]

BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_PIPCE (Photosystem II reaction center protein I OS=Piper cenocladum GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36

[Close]

BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSJ (Photosystem II reaction center protein I OS=Oryza sativa subsp. japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

[Close]

BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSI (Photosystem II reaction center protein I OS=Oryza sativa subsp. indica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

[Close]

BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSA (Photosystem II reaction center protein I OS=Oryza sativa GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

[Close]

BLAST of DN134859 vs. ExPASy Swiss-Prot
Match: PSBI_ORYNI (Photosystem II reaction center protein I OS=Oryza nivara GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   50 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 157
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

The following BLAST results are available for this feature:

BLAST of DN134859 vs. ExPASy Swiss-Prot

BLAST of DN134859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112


Match Name	E-value	Identity	Description
PSBI_AETGR	7.245e-14	100.00	Photosystem II reaction center protein I OS=Aethio...	[more]
PSBI_AETCO	7.245e-14	100.00	Photosystem II reaction center protein I OS=Aethio...	[more]
PSBI_ACOCL	7.245e-14	100.00	Photosystem II reaction center protein I OS=Acorus...	[more]
PSBI_ACOAM	7.245e-14	100.00	Photosystem II reaction center protein I OS=Acorus...	[more]
PSBI_SILLA	1.614e-13	97.22	Photosystem II reaction center protein I OS=Silene...	[more]
PSBI_PIPCE	1.614e-13	97.22	Photosystem II reaction center protein I OS=Piper ...	[more]
PSBI_ORYSJ	1.614e-13	97.22	Photosystem II reaction center protein I OS=Oryza ...	[more]
PSBI_ORYSI	1.614e-13	97.22	Photosystem II reaction center protein I OS=Oryza ...	[more]
PSBI_ORYSA	1.614e-13	97.22	Photosystem II reaction center protein I OS=Oryza ...	[more]
PSBI_ORYNI	1.614e-13	97.22	Photosystem II reaction center protein I OS=Oryza ...	[more]

Pages

Properties


Property Name	Value
Genbank description	wca02d06 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02d06 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN134859 ID=DN134859|Name=DN134859|organism=Citrus sinensis|type=EST|length=413bp
ATCTATTCTCTTTTTCCTTTCCCCAAAAACCTGATTTGGAGATTGTGTAA
TGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCTTTGTTTCG
CTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAATCCCGGACG
CGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAACGTTCT
TAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAGTGTTCG
CTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGAAAGAGA
GGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTACCAATCCG
ACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA