DN134850

Overview
NameDN134850
Unique NameDN134850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13291 contig Csv1_Contig13291:85..533. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
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BLAST of DN134850 vs. ExPASy Swiss-Prot
Match: Y1060_PYRHO (DNA-binding protein PH1060 OS=Pyrococcus horikoshii GN=PH1060 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 42/107 (39.25%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:   61 QMADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREA---DERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVXEXRLISLL 372
            +MA+ ++E IR+R++ EL        Q+   + QKAQE+A+R+    + + Q +L +IL+ EARE  AR+ LV+PE AR VE I+++  Q GQI E++ + +L  +L
Sbjct:    3 EMAE-DIEEIRRRKLMEL--------QRKYLEQQKAQEEAERQQALIEAQIQAILRKILTPEARERLARVKLVRPELARQVELILVQLYQAGQITERIDDAKLKRIL 100
The following BLAST results are available for this feature:
BLAST of DN134850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
Y1060_PYRHO4.069e-1139.25DNA-binding protein PH1060 OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionwca02c03 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02c03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134850 ID=DN134850; Name=DN134850; organism=Citrus sinensis; type=EST; length=449bp
GGGAAGGAAGCAGAAACAGAGTTCAGAGTAGGCAGCGTTTGCTCATCGAT
CCATTCAAATCAAATGGCTGACCCTGAACTAGAAGCAATTAGACAAAGAA
GAATGCAAGAGCTCATGGCCCAACAAGGCGTGGGGAGTCAACAAAATTCT
GAGCAGCATCAGAAAGCTCAGGAAGATGCCAAGAGGGAGGCAGATGAACG
GAGACAAATGATGCTTAGCCAGATTTTGTCAACCGAAGCACGTGAAAGTT
TTGCTCGAATTGCTTTGGTGAAACCCGAGAAGGCTAGAGGTGTTGAGGAC
ATTATATTGAGATCCGCCCAAATGGGTCAGATAGTTGAGAAGGTTNNCGA
ANNNAGGCTCATATCATTGCTGGAACAGATTAACACCCAAACCACCAAAC
AGACCAAAGTCACAATCCAAAGGCGCCGGAGTGTTTTGGAAAATGATGA
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