DN134846

Overview
NameDN134846
Unique NameDN134846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:83..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_NEUCR (Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.588e-11
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAELAK--KLPNVL-FLKVDVDELKTVATDWAVEAMPTLMFLKEGKIV 397
            VV DF A WCGPC+ IAP  A+ AK   +PN L F K++VD ++ VA  + V AMPT +F K GK V
Sbjct:   24 VVADFYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSAMPTFLFFKNGKQV 90          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.073e-11
Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = 2
Query:  155 EAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHL 454
            EA ++  Q        V +VDF A+WCGPC  + P + ELA       +  K++VDE    A  + + ++PT++ +K GK+VD++VGA  + +   IAK L
Sbjct:    7 EATDQNFQAEILNSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNM---IAKKL 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11
Identity = 33/80 (41.25%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTI 442
            VV+D    WCGPC+ +AP   +LA++  +V+FLK+D + E KT+A +  +  +PT   LKE  +V +V GAK ++L + I
Sbjct:  105 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 184          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  146 HTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVG-----AKKEELQQTI 442
            H +E   E  + +   K+ V +VDF A WCGPC+ ++P + ELA +        KV+ DE + ++  + + ++PTL+F K+G++V ++VG     A KE+L + +
Sbjct:    3 HYIELTEENFEST--IKKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLL 105          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  146 HTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVG-----AKKEELQQTI 442
            H +E   E  + +   K+ V +VDF A WCGPC+ ++P + ELA +        KV+ DE + ++  + + ++PTL+F K+G++V ++VG     A KE+L + +
Sbjct:    3 HYIELTEENFEST--IKKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLL 105          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.879e-11
Identity = 33/87 (37.93%), Postives = 56/87 (64.37%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGA-KKEELQQTIAKHLAT 460
            V+V+F A WCGPCR IAP + ELAK+ +  +   KV+ D+   +AT++ + ++PT++  K G+  + V+GA  K  L   I K++++
Sbjct:   86 VLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYVSS 172          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.879e-11
Identity = 33/89 (37.08%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 466
            +VV+D    WCGPC+ IAP    L++K  +V+FLK+D + + + +A +  +  +PT   LK+ K+V +V GAK ++L   I    + AS
Sbjct:   89 LVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSAAS 177          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.879e-11
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAELA-KKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK 418
            V+VDF A+WCGPC+ +AP L E+A ++  ++   K+DVD     A ++ V ++PTL+  K+G+ V ++VGAK
Sbjct:   28 VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 99          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.879e-11
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAELA-KKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK 418
            V+VDF A+WCGPC+ +AP L E+A ++  ++   K+DVD     A ++ V ++PTL+  K+G+ V ++VGAK
Sbjct:   28 VLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 99          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 7.879e-11
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFL-KVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTI 442
            VVVDF A WCGPCR IAP L +LA +    L + KV+ D+    A+   ++ +PTL+  K+G+ V ++VGA+ E + + I
Sbjct:   23 VVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFKDGREVGRLVGARPEAMYREI 102          
The following BLAST results are available for this feature:
BLAST of DN134846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO_NEUCR1.588e-1152.24Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1[more]
THIO2_CHLTE2.073e-1135.64Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
TRXF_SPIOL2.708e-1141.25Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
THIO_HELPY4.619e-1133.33Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]
THIO_HELPJ4.619e-1133.33Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
TRXM_ORYSJ7.879e-1137.93Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXF1_ARATH7.879e-1137.08Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
THIO_MYCTU7.879e-1143.06Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]
THIO_MYCBO7.879e-1143.06Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]
THIO_CHLAA7.879e-1142.50Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionwca02b08 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02b08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134846 ID=DN134846; Name=DN134846; organism=Citrus sinensis; type=EST; length=591bp
TACGGCCGGGAAGAACCCCATACGCAAATCACCAAGAGCAAGAAAGCGAG
GGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGG
AAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACAC
CGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGC
TGGTAGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGACTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTCTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCA
TCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTG
GCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTT
ATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGNNTGAA
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