DN134846

Overview
NameDN134846
Unique NameDN134846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.529e-17
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTI 442
            +VVVDF+A+WCGPC+ I PF   L  K  +V+F+++DVD+ + VAT   V+ MPT  F K GK V +  GA KE+L++TI
Sbjct:   22 LVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 9.609e-17
Identity = 36/84 (42.86%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHL 454
            ++VVDF+A+WCGPC+ I PF   + +K P+V+F+++DVD+ + VA+   V+ MPT  F K  + V +  GA KE+L++ I K++
Sbjct:   22 LIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKYM 105          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.255e-16
Identity = 41/81 (50.62%), Postives = 59/81 (72.84%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTL-MFLKEGKIVDKVVGAKKEELQQTI 442
            +VVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPT   F K+G+ V +  GA KE+L+ TI
Sbjct:   22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIA 445
            +VVVDF A+WCGPC+ IAP + + +++ P   F K+DVDEL  VA    V AMPTL+  K GK V KVVGA    ++Q IA
Sbjct:   20 LVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIA 100          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.796e-16
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGK-IVDKVVGAKKEELQQTIAKH 451
            +VV+DFTASWCGPC+ IAP   E+AK+ P+V+F KVDVDE    A    ++AMPT  F K GK + D V GA +  L++ I K+
Sbjct:   22 LVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.652e-16
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHL 454
            +VVVDF A+WCGPC+ IAP + + A++  +  F K+DVDE+  VA    V +MPTL+F K GK V +VVGA    ++Q IA ++
Sbjct:   21 LVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASNV 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.769e-16
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  164 NEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 469
            NE L+KS+  +  +++VDF A+WCGPCR I+P    L+ +  N  FLKV+ D  + +   +++ AMPT +F K  + VD V GA +  +  TI KH ++  A
Sbjct:   13 NEILEKSDSNR--LIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKHYSSTPA 112          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.229e-16
Identity = 42/104 (40.38%), Postives = 66/104 (63.46%), Query Frame = 2
Query:  131 QVIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTI 442
            +V+   + E+WN  + ++ + +   +V  FTA WC P  F+  F  ELA    + LFL VDVDE+K VA+   V+AMPT +FLK+G  +DK+VGA  +E+++ +
Sbjct:    3 RVVKIDSAESWNFYVSQA-KNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 6.229e-16
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  182 SNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKHL 454
            S ET + VV+ DF A WCGPC+ IAP L EL +++ + L  +K+DVDE +  A  + V ++PTL+ LK+G++V+  VG K KE LQ+ + KHL
Sbjct:   12 SAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.062e-15
Identity = 37/97 (38.14%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  167 EQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLA 457
            EQL + +  K  ++++DF A+WCGPC+ IAP   ELA     ++F KVDVDE + + + + V+ MPT +F K G  ++ + G  ++EL+Q + +H++
Sbjct:   19 EQLIRQHPEK--IIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVS 113          
The following BLAST results are available for this feature:
BLAST of DN134846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO_CHICK2.529e-1750.00Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_OPHHA9.609e-1742.86Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_PONAB1.255e-1650.62Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
TRX1_YEAST2.141e-1651.85Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO_GEOCY2.796e-1651.19Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
TRX2_YEAST3.652e-1647.62Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
NGLY1_CAEBR4.769e-1639.22Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRXL4_ARATH6.229e-1640.38Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO_BACSU6.229e-1647.31Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
THIO1_CAEEL1.062e-1538.14Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]

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Properties
Property NameValue
Genbank descriptionwca02b08 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02b08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134846 ID=DN134846; Name=DN134846; organism=Citrus sinensis; type=EST; length=591bp
TACGGCCGGGAAGAACCCCATACGCAAATCACCAAGAGCAAGAAAGCGAG
GGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGG
AAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACAC
CGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGC
TGGTAGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGACTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTCTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCA
TCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTG
GCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTT
ATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGNNTGAA
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