DN134846

Overview
NameDN134846
Unique NameDN134846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.091e-15
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKH 451
            +V++DF A WCGPC+ + P L  LA +LP+V  LKVD+D     A  ++V ++PTL+  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKH 101          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 6.887e-15
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  167 EQLQKSNETKQLV-----VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHL 454
            +Q+  S+E K +V     VVVDF A+WCGPC+ IAP   + +    +  F+KVDVD+L  +A +  V AMP+    K G+ ++++VGA   +L+ +I  +L
Sbjct:    3 KQVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKANL 103          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.887e-15
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLA 457
            +V+VDF A WCGPC+ IAPF  E +K    ++F+KVDVDE+  V     + +MPT    K G  VD ++GA    L+Q I K+ A
Sbjct:   20 LVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.887e-15
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  134 VIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKK--LPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKH 451
            V+    + A++  L+ + +    +VVVDFTA+WCGPC+ I P    L+K     NV+FLKVDVD+   V++   ++ MPT  F K G+ +D+  GA ++ L+Q I  H
Sbjct:    2 VVHIENLNAFSAALKNAGDK---LVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 8.994e-15
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  188 ETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAK 448
            E  + +V VDF+A+WCGPCR I PF   L+ K  +V+FL+VD D  + V  + A+  +PT  F K+ + VD++ GA KE+L+  IA+
Sbjct:  465 EAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAE 551          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.994e-15
Identity = 41/98 (41.84%), Postives = 65/98 (66.33%), Query Frame = 2
Query:  164 NEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHL 454
            N QL K++     +VV+DF A+WCGPC+ I+P LAEL+ +  + V+ LKVDVDE + +A ++ + +MPT +FLK G  V++  GA  + L+  I  ++
Sbjct:   12 NGQLTKASGK---LVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLEDVIKANI 106          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 37/85 (43.53%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHL 454
            +VV+DF A+WCGPC+ I+P L EL+ +   NV+ LKVDVDE + +A ++ + +MPT +FLK G  V++  GA  + L+  I  ++
Sbjct:   30 LVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 114          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKH 451
            +V+VDF A WCGPC+ + P L  LA +LP V  LK+D+D     A  + V ++PTL+  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.418e-14
Identity = 36/84 (42.86%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKH 451
            +VV+DF A WCGPC+ IAP L ELA +  + V+ LKV+VDE + +  ++ V +MPT +F+K G +++  VG   ++L + + KH
Sbjct:   22 LVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKH 105          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.418e-14
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGA-KKEELQQTIAKHL 454
            V+VDF A WCGPCR +AP + E+A++  + V  +KV+ DE  +VA+ + + ++PTLM  K+G+ VD VVGA  K  L  T+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKHL 107          
The following BLAST results are available for this feature:
BLAST of DN134846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO_CHLTR3.091e-1545.24Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
TRX1_SCHPO6.887e-1538.61Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_PLAF76.887e-1544.71Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO_ICTPU6.887e-1538.89Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
TXND2_HUMAN8.994e-1543.68Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
THIO2_DROYA8.994e-1541.84Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO2_DROME1.175e-1443.53Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
THIO_CHLMU2.004e-1445.24Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIOT_DROME3.418e-1442.86Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIO1_SYNE73.418e-1447.06Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]

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Properties
Property NameValue
Genbank descriptionwca02b08 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02b08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134846 ID=DN134846; Name=DN134846; organism=Citrus sinensis; type=EST; length=591bp
TACGGCCGGGAAGAACCCCATACGCAAATCACCAAGAGCAAGAAAGCGAG
GGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGG
AAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACAC
CGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGC
TGGTAGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGACTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTCTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCA
TCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTG
GCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTT
ATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGNNTGAA
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