DN134846

Overview
NameDN134846
Unique NameDN134846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:83..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGA-KKEELQQTIAKHL 454
            V+VDF A WCGPCR +AP + E+A++    +  +KV+ DE   VA+ + + ++PTLM  K G+ VD VVGA  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.464e-14
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGA-KKEELQQTIAKHL 454
            V+VDF A WCGPCR +AP + E+A++    +  +KV+ DE   VA+ + + ++PTLM  K G+ VD VVGA  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTI 442
            +V+DF A+WCGPC+ + P L +L +  P+V F+K DVDE   +A +  V AMPT +  K+G+++ K++GA    L++ I
Sbjct:   46 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGI 124          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  167 EQLQKSNETKQL--VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGA-KKEELQQTIAKHL 454
            ++L   NE  Q   +V+VDF A WCGPCR I P L E+AK+  N+  ++V+ DE   +AT + + ++PTLM  K+G+ VD V+GA  K  L  TI K+L
Sbjct:    5 DELTFENEVLQSEKLVLVDFWAPWCGPCRMIGPILEEIAKEF-NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGAVPKSILIHTINKYL 102          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKH 451
            +V+VDF A WCGPCR + P L  LA +LP+V   K+++DE    A  + V ++PTL+  K+G  V +VVG K KE L   I KH
Sbjct:   18 LVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  164 NEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 469
            N  L++S+  +  ++++DF A+WCGPCR I+P   + + +  N  FLKV+ D  + +   + + AMPT +FLK  + VD V GA ++ + + I +H +   A
Sbjct:   13 NNILERSDANR--LIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQHYSPTPA 112          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKHL 454
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  + A  + V ++PTL+  K+G+ VDKVVG + KE L + I KHL
Sbjct:   19 VNLVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKHL 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKHL 454
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  + A  + V ++PTL+  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKHL 454
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  + A  + V ++PTL+  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKHL 454
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  + A  + V ++PTL+  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of DN134846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO1_ANASP4.464e-1447.06Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO4.464e-1447.06Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
TRX3_YEAST5.830e-1441.77Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]
THIO_CYAME5.830e-1444.44Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
THIO_CHLPN5.830e-1446.43Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
NGLY1_CAEEL5.830e-1434.31Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO_STAS17.614e-1450.00Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_STAAW7.614e-1448.84Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU7.614e-1448.84Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS7.614e-1448.84Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]

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Properties
Property NameValue
Genbank descriptionwca02b08 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02b08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134846 ID=DN134846; Name=DN134846; organism=Citrus sinensis; type=EST; length=591bp
TACGGCCGGGAAGAACCCCATACGCAAATCACCAAGAGCAAGAAAGCGAG
GGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGG
AAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACAC
CGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGC
TGGTAGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGACTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTCTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCA
TCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTG
GCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTT
ATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGNNTGAA
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