DN134846

Overview
NameDN134846
Unique NameDN134846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKHL 454
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  + A  + V ++PTL+  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKHL 454
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  + A  + V ++PTL+  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKHL 454
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  + A  + V ++PTL+  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKHL 454
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  + A  + V ++PTL+  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKHL 454
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  + A  + V ++PTL+  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKHL 454
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  + A  + V ++PTL+  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKHL 454
            V +VDF A+WCGPC+ IAP L ELA         LK+DVDE  + A  + V ++PTL+  K+G+ VDKVVG + KE L + + KHL
Sbjct:   19 VQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 37/103 (35.92%), Postives = 64/103 (62.14%), Query Frame = 2
Query:  152 VEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGA-KKEELQQTIAKHL 454
            ++  +   +K     + +V+VDF A WCGPCR I+P + ELA++ +  V  +K++ DE  +++ ++ + ++PTLM  K+GK VD V+GA  K  L   + K+L
Sbjct:    5 IQVTDFSFEKEVVNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLA 457
            ++++DF A+WCGPCR I+P   + ++K    N++F KVDVD    ++ +  + AMPT    K+G+ +D++VGA    L+  + K LA
Sbjct:   20 IIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQKSLA 106          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.944e-14
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  134 VIGCHTVEAWNEQLQKSNETKQLVVVVDFTASWCGPCRFIAPFLAELAKKL--PNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIA 445
            VI   + + W   + KS       + VD  A WCGPC+ I+P  ++LA K   P  +F KV+VDE + +A+   V+AMPT +F + GK +D + GA  + L++ +A
Sbjct:    3 VIEIRSYQHWISTIPKSG-----YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVA 103          
The following BLAST results are available for this feature:
BLAST of DN134846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO_STAAR7.614e-1448.84Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN7.614e-1448.84Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM7.614e-1448.84Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC7.614e-1448.84Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB7.614e-1448.84Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA87.614e-1448.84Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA37.614e-1448.84Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_CYACA7.614e-1435.92Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_COPCM7.614e-1437.93Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
TXL1_SCHPO9.944e-1436.79Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionwca02b08 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02b08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134846 ID=DN134846; Name=DN134846; organism=Citrus sinensis; type=EST; length=591bp
TACGGCCGGGAAGAACCCCATACGCAAATCACCAAGAGCAAGAAAGCGAG
GGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGG
AAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACAC
CGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGC
TGGTAGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGACTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTCTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCA
TCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTG
GCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTT
ATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGNNTGAA
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