DN134846

Overview
NameDN134846
Unique NameDN134846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13
Identity = 36/91 (39.56%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  188 ETKQLVVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKHL 454
            ET + +V+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PTL+  K+G++V+ ++G + KEEL + I K++
Sbjct:   13 ETSEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHL 454
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT++ +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTI 442
            VV+D    WCGPC+ +AP   ELA+KL +V+FLK+D + E K +A +  +  +PT   LK GKIVD+V GAK ++L   I
Sbjct:  106 VVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAI 185          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQ 433
            VVVDF A+WCGPC+ IAP L +L++    + F KVDVDEL  VA    V AMPT  F K G+  ++V GA    +Q
Sbjct:   23 VVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQ 98          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  206 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKHLA 457
            VVVD  A+WCGPC+ IAP + + A+   +  F ++DVDEL  VA +  + AMPT +  K+G+ V  VVGA    L+  I   LA
Sbjct:   27 VVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIKALLA 110          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAK-KEELQQTIAKH 451
            +V++DF A WCGPC+ + P L  L  ++ +VL  KV++D+    A  + V ++PTL+  K+GK VD+VVG K K+ L + I +H
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQH 101          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 31/83 (37.35%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  203 VVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGAKKEELQQTIAKH 451
            V VVDF A WCGPC+++ PFL +L+++     F+ V+ D+   +A    V A+PT++  ++G+ +D++VGA  + L   +AK+
Sbjct:   37 VTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.418e-13
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  146 HTVEAWNE-QLQKSNETKQLV------VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGA-KKEELQQTIAKHL 454
            H  EA NE Q+   +   +LV      V+VDF A WCGPCR IAP + ELAK+    +   K++ DE    AT + + ++PT++F K G+  D V+GA  K  L + + K++
Sbjct:   61 HAREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.418e-13
Identity = 34/88 (38.64%), Postives = 59/88 (67.05%), Query Frame = 2
Query:  200 LVVVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 457
            L V+VDF A WCGPCR ++P + E+A++   ++  +K++ D+  T+A ++ + ++PTLM  K G+ VD V+GA  K  L  T+ K+++
Sbjct:   20 LPVLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAVPKSTLASTLNKYIS 107          
BLAST of DN134846 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.436e-12
Identity = 33/88 (37.50%), Postives = 59/88 (67.05%), Query Frame = 2
Query:  200 LVVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKTVATDWAVEAMPTLMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 457
            L V+VDF A WCGPCR ++P +  +A++  + +  +K++ D+  T+A ++ + ++PTLM  K G+ VD V+GA  K  L+ T+ K+++
Sbjct:   20 LPVLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTVIGAVPKSTLESTLNKYIS 107          
The following BLAST results are available for this feature:
BLAST of DN134846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO_LISIN3.779e-1339.56Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIOM_BOVIN3.779e-1342.86Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
TRXF_MESCR4.935e-1347.50Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO_PENCH4.935e-1350.00Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_EMENI4.935e-1344.05Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIO_CHLCV4.935e-1341.67Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
TRX2_SCHPO6.446e-1337.35Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
TRXM_PEA8.418e-1338.39Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
THIO_PORYE8.418e-1338.64Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
THIO_PORPU1.436e-1237.50Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca02b08 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02b08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134846 ID=DN134846; Name=DN134846; organism=Citrus sinensis; type=EST; length=591bp
TACGGCCGGGAAGAACCCCATACGCAAATCACCAAGAGCAAGAAAGCGAG
GGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGG
AAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACAC
CGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGC
TGGTAGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGACTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTCTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCA
TCTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTG
GCTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTT
ATTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGNNTGAA
back to top