DN134845

Overview
NameDN134845
Unique NameDN134845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:130..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 5.155e-20
Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = 2
Query:   80 GQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKHLA 406
            G VI   +  AW+ QL K  E  + +VVDFTA+WCGPC+ IAP    L+      V+FLKVDVD + +VA    + AMPTF   K+G   D +VGA +++L+  +AKH A
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 112          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.148e-19
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  110 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTI 391
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.148e-19
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 2
Query:  107 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAK 397
            EA+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  GA KE+L+ TI +
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITE 103          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.148e-19
Identity = 47/94 (50.00%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  110 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTI 391
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.500e-19
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  110 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTI 391
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.959e-19
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 2
Query:  107 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKH 400
            EA+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V+ MPTF F K+G+ V +  GA KE+L+ +I ++
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.959e-19
Identity = 46/95 (48.42%), Postives = 68/95 (71.58%), Query Frame = 2
Query:  107 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTI 391
            +A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:    9 DAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.558e-19
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  110 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTI 391
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.341e-19
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  110 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTI 391
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALDDAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.364e-19
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  110 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTI 391
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+F++VDVD+ K +A +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEVLDSAGD--KLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of DN134845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
TRXH_CHLRE5.155e-2045.45Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
THIO_SHEEP1.148e-1950.00Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_RAT1.148e-1949.48Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_PIG1.148e-1950.00Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_BOVIN1.500e-1950.00Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MOUSE1.959e-1947.96Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_CALJA1.959e-1948.42Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_HUMAN2.558e-1948.94Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_MACMU3.341e-1948.94Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_RABIT4.364e-1947.87Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionwca02b07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02b07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134845 ID=DN134845; Name=DN134845; organism=Citrus sinensis; type=EST; length=659bp
TACGGCCGGGGANGAAGTATCGTTGGGTGGAGTAGTGGTGGTATAACCGC
GGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCAC
ACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACA
GCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCA
TTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTT
CTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGT
GGAGGCCATGCCAACTTTCACGTTCCTGAAAGAGGGGAAGATTGTGGACA
AGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCAT
CTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGG
CTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTA
TTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAA
TTTACTGTTCCATGAAGCTCATACTGTGGTCTTTACAATAATTTNNNTTC
ATATTTGTTGTTGACCCTAATTTTGACGTAAAANNAAAAAAAAAAAAAAA
AAAAAAAAA
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