DN134845

Overview
NameDN134845
Unique NameDN134845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:130..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 2
Query:   68 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGA-KKEELQQTIAKHL 403
            A  E QV+      +W+E L   +ET   V+VDF A WCGPCR IAP + ELAK+    +   K++ DE  + AT + + ++PT  F K G+  D V+GA  K  L + + K++
Sbjct:   65 AVNEVQVVND---SSWDE-LVIGSETP--VLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  146 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 415
            ++LVV+D    WCGPC+ IAP    L++K  +V+FLK+D + + + +A +  +  +PTF  LK+ K+V +V GAK ++L   I    + AS
Sbjct:   87 EKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSAAS 177          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  140 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGA-KKEELQQTIAKHLA 406
            E++  V+VDF A WCGPC+ IAP + ELAK+    +   K++ DE   +AT + + ++PT  F K G+  + ++GA  K  L  +I K+L+
Sbjct:   90 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 180          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  152 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAK-KEELQQTIAKHL 403
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT    K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  152 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAK-KEELQQTIAKHL 403
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT    K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TR548_MIMIV (Thioredoxin-like protein R548 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R548 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  137 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV--DELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAK 397
            +E+K LV++DF  +WCGPC+ IAP    +A+K P V F K++   + L ++     + ++PTF F K GK + + V A    L+++I +
Sbjct:   46 DESKGLVIIDFFTTWCGPCKRIAPDYIRMAEKYPTVSFYKINAENENLANIVAACEIVSLPTFCFFKAGKYIGRFVNADPVGLEKSIVE 134          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 2
Query:   47 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSN--ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGA-KKEELQQTIAKHL 403
            PR++ +  AE G V         N+   K+   E+   V+VDF A WCGPCR IAP + E+A +  + L  +K++ DE  +VA+++ + ++PT    K GK  + ++GA  K  + QT+ K+L
Sbjct:   26 PRRSVVVRAEAGAV---------NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  155 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTI 391
            VV+D    WCGPC+ +AP   +LA++  +V+FLK+D + E K++A +  +  +PTF  LKE  +V +V GAK ++L + I
Sbjct:  105 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 184          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  146 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFTFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 418
            +++VV+D    WCGPC+ IAP    L++K  +V+FLK+D + E + +A +  +  +PTF  LK+ ++V +V GAK ++L   I    + +S+
Sbjct:   90 EKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARSASSS 181          
BLAST of DN134845 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  143 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFTFLKEGKIVDKVVGA-KKEELQQTIAKHL 403
            ++Q V+VDF A WCGPCR IA  + E+A    + L  +KV+ D+  ++AT++ + ++PT      GK VD VVGA  K  L  T+ KHL
Sbjct:   18 SRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHL 106          
The following BLAST results are available for this feature:
BLAST of DN134845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
TRXM_PEA5.167e-1238.60Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXF1_ARATH5.167e-1238.46Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
TRXM_SPIOL8.813e-1238.46Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_LISMO8.813e-1239.53Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN8.813e-1239.53Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
TR548_MIMIV1.151e-1135.96Thioredoxin-like protein R548 OS=Acanthamoeba poly... [more]
TRXM_CHLRE1.503e-1134.96Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
TRXF_SPIOL1.963e-1141.25Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
TRXF_BRANA1.963e-1135.87Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
THIO_GRIPA1.963e-1142.70Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionwca02b07 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02b07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134845 ID=DN134845; Name=DN134845; organism=Citrus sinensis; type=EST; length=659bp
TACGGCCGGGGANGAAGTATCGTTGGGTGGAGTAGTGGTGGTATAACCGC
GGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCAC
ACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACA
GCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCA
TTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTT
CTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGT
GGAGGCCATGCCAACTTTCACGTTCCTGAAAGAGGGGAAGATTGTGGACA
AGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCAT
CTGGCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGG
CTTTAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTA
TTAGAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAA
TTTACTGTTCCATGAAGCTCATACTGTGGTCTTTACAATAATTTNNNTTC
ATATTTGTTGTTGACCCTAATTTTGACGTAAAANNAAAAAAAAAAAAAAA
AAAAAAAAA
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