DN134838

Overview
NameDN134838
Unique NameDN134838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_STAPU (Photosystem II reaction center protein I OS=Staurastrum punctulatum GN=psbI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPTRNPGRKE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_ANTFO (Photosystem II reaction center protein I OS=Anthoceros formosae GN=psbI PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPKRNPGRKE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_ADICA (Photosystem II reaction center protein I OS=Adiantum capillus-veneris GN=psbI PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVY VVIFFVSLF+FGFLSNDPGRNPGR++
Sbjct:    1 MLTLKLFVYAVVIFFVSLFVFGFLSNDPGRNPGRKD 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_WELMI (Photosystem II reaction center protein I OS=Welwitschia mirabilis GN=psbI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLK+FVYTVV FF+SLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKVFVYTVVTFFISLFLFGFLSNDPGRNPGRKE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_OEDCA (Photosystem II reaction center protein I OS=Oedogonium cardiacum GN=psbI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.130e-12
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLK+FVYTVV FFVSLF+FGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKIFVYTVVTFFVSLFVFGFLSNDPGRNPGKRE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_CHLVU (Photosystem II reaction center protein I OS=Chlorella vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.130e-12
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPGQRE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_NEPOL (Photosystem II reaction center protein I OS=Nephroselmis olivacea GN=psbI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG ++
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPGTKD 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_OLTVI (Photosystem II reaction center protein I OS=Oltmannsiellopsis viridis GN=psbI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.546e-11
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPG 156
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPG 33          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_CHLAT (Photosystem II reaction center protein I OS=Chlorokybus atmophyticus GN=psbI PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.325e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLK+FVYTVVIFFVSLFIFGFLSNDP RNP R++
Sbjct:    1 MLTLKIFVYTVVIFFVSLFIFGFLSNDPARNPKRKD 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_STIHE (Photosystem II reaction center protein I OS=Stigeoclonium helveticum GN=psbI PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLK+FVYTVV FFV LF+FGFLSNDPGRNPG+ +
Sbjct:    1 MLTLKIFVYTVVTFFVCLFVFGFLSNDPGRNPGKRD 36          
The following BLAST results are available for this feature:
BLAST of DN134838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PSBI_STAPU2.303e-1291.67Photosystem II reaction center protein I OS=Staura... [more]
PSBI_ANTFO2.303e-1291.67Photosystem II reaction center protein I OS=Anthoc... [more]
PSBI_ADICA2.303e-1288.89Photosystem II reaction center protein I OS=Adiant... [more]
PSBI_WELMI3.928e-1286.11Photosystem II reaction center protein I OS=Welwit... [more]
PSBI_OEDCA5.130e-1286.11Photosystem II reaction center protein I OS=Oedogo... [more]
PSBI_CHLVU5.130e-1288.89Photosystem II reaction center protein I OS=Chlore... [more]
PSBI_NEPOL1.493e-1186.11Photosystem II reaction center protein I OS=Nephro... [more]
PSBI_OLTVI2.546e-1193.94Photosystem II reaction center protein I OS=Oltman... [more]
PSBI_CHLAT3.325e-1186.11Photosystem II reaction center protein I OS=Chloro... [more]
PSBI_STIHE4.343e-1180.56Photosystem II reaction center protein I OS=Stigeo... [more]

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Properties
Property NameValue
Genbank descriptionwca02a05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02a05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134838 ID=DN134838; Name=DN134838; organism=Citrus sinensis; type=EST; length=421bp
GGCCGGGGATCTATTCTCTTTTTCCTTTCCCCAAAAACCTGATTTGGAGA
TTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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