DN134838

Overview
NameDN134838
Unique NameDN134838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_LEPTE (Photosystem II reaction center protein I OS=Leptosira terrestris GN=psbI PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR 159
            MLTLK+FVYTVV FFVSLF+FGFLSNDPGRNP R
Sbjct:    1 MLTLKIFVYTVVTFFVSLFVFGFLSNDPGRNPSR 34
[Close]
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_PSEAK (Photosystem II reaction center protein I OS=Pseudendoclonium akinetum GN=psbI PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.675e-11
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR 159
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNP +
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPNQ 34
The following BLAST results are available for this feature:
BLAST of DN134838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PSBI_LEPTE4.343e-1188.24Photosystem II reaction center protein I OS=Leptos... [more]
PSBI_PSEAK9.675e-1188.24Photosystem II reaction center protein I OS=Pseude... [more]

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Properties
Property NameValue
Genbank descriptionwca02a05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02a05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134838 ID=DN134838; Name=DN134838; organism=Citrus sinensis; type=EST; length=421bp
GGCCGGGGATCTATTCTCTTTTTCCTTTCCCCAAAAACCTGATTTGGAGA
TTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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