DN134838 | Citrus Genome Database

Overview


Name	DN134838
Unique Name	DN134838
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	421

Libraries


Library Name	Type
Developing fruit albedo at 80 DAFB in Vulnus5 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_AETGR (Photosystem II reaction center protein I OS=Aethionema grandiflora GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_AETCO (Photosystem II reaction center protein I OS=Aethionema cordifolium GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_ACOCL (Photosystem II reaction center protein I OS=Acorus calamus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_ACOAM (Photosystem II reaction center protein I OS=Acorus americanus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_SILLA (Photosystem II reaction center protein I OS=Silene latifolia GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1

Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36

[Close]

BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_PIPCE (Photosystem II reaction center protein I OS=Piper cenocladum GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1

Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36

[Close]

BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSJ (Photosystem II reaction center protein I OS=Oryza sativa subsp. japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1

Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

[Close]

BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSI (Photosystem II reaction center protein I OS=Oryza sativa subsp. indica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1

Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

[Close]

BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSA (Photosystem II reaction center protein I OS=Oryza sativa GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1

Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

[Close]

BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_ORYNI (Photosystem II reaction center protein I OS=Oryza nivara GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1

Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

The following BLAST results are available for this feature:

BLAST of DN134838 vs. ExPASy Swiss-Prot

BLAST of DN134838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112


Match Name	E-value	Identity	Description
PSBI_AETGR	7.158e-14	100.00	Photosystem II reaction center protein I OS=Aethio...	[more]
PSBI_AETCO	7.158e-14	100.00	Photosystem II reaction center protein I OS=Aethio...	[more]
PSBI_ACOCL	7.158e-14	100.00	Photosystem II reaction center protein I OS=Acorus...	[more]
PSBI_ACOAM	7.158e-14	100.00	Photosystem II reaction center protein I OS=Acorus...	[more]
PSBI_SILLA	1.595e-13	97.22	Photosystem II reaction center protein I OS=Silene...	[more]
PSBI_PIPCE	1.595e-13	97.22	Photosystem II reaction center protein I OS=Piper ...	[more]
PSBI_ORYSJ	1.595e-13	97.22	Photosystem II reaction center protein I OS=Oryza ...	[more]
PSBI_ORYSI	1.595e-13	97.22	Photosystem II reaction center protein I OS=Oryza ...	[more]
PSBI_ORYSA	1.595e-13	97.22	Photosystem II reaction center protein I OS=Oryza ...	[more]
PSBI_ORYNI	1.595e-13	97.22	Photosystem II reaction center protein I OS=Oryza ...	[more]

Pages

Properties


Property Name	Value
Genbank description	wca02a05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02a05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN134838 ID=DN134838; Name=DN134838; organism=Citrus sinensis; type=EST; length=421bp
GGCCGGGGATCTATTCTCTTTTTCCTTTCCCCAAAAACCTGATTTGGAGA
TTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA