DN134838

Overview
NameDN134838
Unique NameDN134838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_AMBTC (Photosystem II reaction center protein I OS=Amborella trichopoda GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_CRYJA (Photosystem II reaction center protein I OS=Cryptomeria japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_PHYPA (Photosystem II reaction center protein I OS=Physcomitrella patens GN=psbI PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.720e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_MARPO (Photosystem II reaction center protein I OS=Marchantia polymorpha GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.720e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_HUPLU (Photosystem II reaction center protein I OS=Huperzia lucidula GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.720e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_CHAVU (Photosystem II reaction center protein I OS=Chara vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.720e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_ANGEV (Photosystem II reaction center protein I OS=Angiopteris evecta GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.720e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_LEPVR (Photosystem II reaction center protein I OS=Lepidium virginicum GN=psbI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.640e-13
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLF FGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFKFGFLSNDPGRNPGREE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_CYCTA (Photosystem II reaction center protein I OS=Cycas taitungensis GN=psbI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.060e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            M TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of DN134838 vs. ExPASy Swiss-Prot
Match: PSBI_JASNU (Photosystem II reaction center protein I OS=Jasminum nudiflorum GN=psbI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.915e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1
Query:   58 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGQRE 36          
The following BLAST results are available for this feature:
BLAST of DN134838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PSBI_AMBTC1.595e-1397.22Photosystem II reaction center protein I OS=Ambore... [more]
PSBI_CRYJA2.083e-1397.22Photosystem II reaction center protein I OS=Crypto... [more]
PSBI_PHYPA2.720e-1394.44Photosystem II reaction center protein I OS=Physco... [more]
PSBI_MARPO2.720e-1394.44Photosystem II reaction center protein I OS=Marcha... [more]
PSBI_HUPLU2.720e-1394.44Photosystem II reaction center protein I OS=Huperz... [more]
PSBI_CHAVU2.720e-1394.44Photosystem II reaction center protein I OS=Chara ... [more]
PSBI_ANGEV2.720e-1394.44Photosystem II reaction center protein I OS=Angiop... [more]
PSBI_LEPVR4.640e-1397.22Photosystem II reaction center protein I OS=Lepidi... [more]
PSBI_CYCTA6.060e-1394.44Photosystem II reaction center protein I OS=Cycas ... [more]
PSBI_JASNU7.915e-1394.44Photosystem II reaction center protein I OS=Jasmin... [more]

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Properties
Property NameValue
Genbank descriptionwca02a05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02a05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134838 ID=DN134838; Name=DN134838; organism=Citrus sinensis; type=EST; length=421bp
GGCCGGGGATCTATTCTCTTTTTCCTTTCCCCAAAAACCTGATTTGGAGA
TTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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