DN134825

Overview
NameDN134825
Unique NameDN134825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 3.663e-65
Identity = 111/142 (78.17%), Postives = 129/142 (90.85%), Query Frame = 1
Query:  199 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            MA KRI +EL DL KDPP+SCSAGPV +D+FHWQATIMGP+DSPYAGGVF ++IHFP DYPF+PPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YK+ ++ YE +AR WT
Sbjct:    1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWT 142          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.784e-65
Identity = 107/141 (75.89%), Postives = 130/141 (92.20%), Query Frame = 1
Query:  202 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            +SKRI KEL DL++DPPTSCSAGPV +D++HWQA+IMGP+DSPYAGGVF ++IHFP DYPF+PPK++F TK++HPNIN+NG+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIAH+YK+ +  YE+TAR WT
Sbjct:    3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWT 143          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.101e-64
Identity = 110/142 (77.46%), Postives = 122/142 (85.92%), Query Frame = 1
Query:  199 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            MA KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGP+DSPY GGVF +TIHFP DYPF+PPKVAF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVPEIAH YK+ +  Y   AR WT
Sbjct:    1 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWT 142          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.539e-63
Identity = 108/141 (76.60%), Postives = 127/141 (90.07%), Query Frame = 1
Query:  202 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            +SKRI KEL DL +DPP SCSAGPV +D++HWQA+IMGPSDSPYAGGVF ++IHFP DYPF+PPKV F TK++HPNINS+G+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIA +YK+ KA YE+TA+ WT
Sbjct:    3 SSKRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWT 143          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.849e-63
Identity = 109/142 (76.76%), Postives = 121/142 (85.21%), Query Frame = 1
Query:  199 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPF+PPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+ +  Y   AR WT
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWT 142          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.849e-63
Identity = 109/142 (76.76%), Postives = 121/142 (85.21%), Query Frame = 1
Query:  199 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPF+PPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+ +  Y   AR WT
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWT 142          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.849e-63
Identity = 109/142 (76.76%), Postives = 121/142 (85.21%), Query Frame = 1
Query:  199 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPF+PPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+ +  Y   AR WT
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWT 142          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.849e-63
Identity = 109/142 (76.76%), Postives = 121/142 (85.21%), Query Frame = 1
Query:  199 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPF+PPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+ +  Y   AR WT
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWT 142          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.849e-63
Identity = 109/142 (76.76%), Postives = 121/142 (85.21%), Query Frame = 1
Query:  199 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP+DSPY GGVF +TIHFP DYPF+PPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+ +  Y   AR WT
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWT 142          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.303e-62
Identity = 106/142 (74.65%), Postives = 125/142 (88.03%), Query Frame = 1
Query:  199 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            M+ KRI KEL DL +DPP+SCSAGPV +D++HWQA+IMGP DSPYAGGVF ++IHFP DYP +PPK+A  TK++HPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTD NPDDPLVPEIAH+YK  +  YE+TA+ WT
Sbjct:    1 MSLKRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWT 142          
The following BLAST results are available for this feature:
BLAST of DN134825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC4_SCHPO3.663e-6578.17Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC4_YEAST4.784e-6575.89Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UB2D4_HUMAN3.101e-6477.46Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC5_YEAST1.539e-6376.60Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UB2D2_XENLA5.849e-6376.76Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT5.849e-6376.76Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE5.849e-6376.76Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN5.849e-6376.76Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN5.849e-6376.76Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC4_CANAL1.303e-6274.65Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]

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Properties
Property NameValue
Genbank descriptionwca01g09 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01g09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134825 ID=DN134825; Name=DN134825; organism=Citrus sinensis; type=EST; length=624bp
CGGCCGGGGCTCGACGATATTTGTGTTGAAGNAAACGAAGCAAGGGGTTG
ATAGAGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGT
TTCGCTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAG
GTCTTAAGGTTCGTTGTAGTTTCAATTTTAATAATCCCCTGAAGAGTCAT
GGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTC
CCACGTCTTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAA
GCAACAATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTT
AGTTACCATTCATTTTCCTCCTGATTATCCTTTCGAGCCCCCAAAGGTTG
CTTTTAGGACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCATC
TGTCTTGATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAA
GGTCCTGCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCTGACGACC
CTCTTGTACCGGAGATTGCCCACATGTACAAGTCCCACAAGGCCANATAT
GAATCCACGGCCAGGAGCTGGACA
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