DN134825

Overview
NameDN134825
Unique NameDN134825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.821e-27
Identity = 58/148 (39.19%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  202 ASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYE 603
            A KR+LKEL+ L KD P    AGP +E+ +F W   I GP D+PYA GVF   + FP DYP  PPK+ F   + HPNI  NG +C+ IL             +E+WSP  ++ K+LLS+ S+L++PN +     +   +++ ++  +E
Sbjct:    5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFE 152          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.567e-26
Identity = 61/139 (43.88%), Postives = 84/139 (60.43%), Query Frame = 1
Query:  211 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS-DSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            RI+KE + L  +P     A P   +  ++   I G S DSP+ GG F   +    +YP   PKV F TK++HPN++    I LDILK++WSPAL I  VLLSI +LL  PNPDDPL  ++   +K+++A    TAR+WT
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWT 145          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 1
Query:  205 SKRILKELKDLQKDPPTSCS------AGPVAEDMFHWQ---ATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            S R+ KELK L  DPP   S      A   + D   +    A I GP D+ YA G+F + I  P  YPF+PP V+F T ++HPNI+++G ICLDIL    K  W P+L IS VL S+  LL++PNPDD L+ E++  YK ++  ++  AR  T
Sbjct:    8 SLRMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMT 160          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 57/139 (41.01%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  208 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            +++ KE+  L  DPP      P  ED+   Q +I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN++SNG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +   Y S AR  T
Sbjct:   14 RQVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMT 152          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 57/142 (40.14%), Postives = 84/142 (59.15%), Query Frame = 1
Query:  211 RILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKA-XYESTARSWT 624
            R+ KE K++Q++         + +D  +F W A I GPS++PY GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ +S     + S A+ +T
Sbjct:    7 RLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYT 148          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.322e-25
Identity = 60/146 (41.10%), Postives = 85/146 (58.22%), Query Frame = 1
Query:  199 MASKRILKELKDLQKDPPT---SCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            MA  RI +E K++ +       S     V +     +  I GP D+PY GG F++ I  P  YPF PPKV F T+++HPNI+S  G+ICLDILK+ W+ A+T+  VLLS+ +LL    PDDP    +A+ +K     +  TA+ WT
Sbjct:    4 MAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWT 149          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.322e-25
Identity = 57/139 (41.01%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  208 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            +R+ KE+  L  DPP      P  ED+   Q  I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +   Y S AR  T
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMT 152          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.078e-24
Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  208 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            +++ KE+  L  DPP      P  ED+   Q  I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +   Y S AR  T
Sbjct:   14 RQVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMT 152          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.078e-24
Identity = 52/150 (34.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  193 RVMASKRILKELKDLQKDPPTSCSAGPVAED-MFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXY 600
            + MA +R++KE K+L ++ P   +AGP  ED  F W   I GP  +P+ GG++  T+ FP DYP  PP + F  + FHPN+  +G++C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     +   M++  +  Y
Sbjct:    3 KAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEY 152          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.408e-24
Identity = 53/131 (40.46%), Postives = 81/131 (61.83%), Query Frame = 1
Query:  193 RVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS 585
            R   SKR+ +EL+ L        +A P  +++F W AT+ GP D+ Y    + +T+ FP DYP++PP V F T  +HPN++ +G+ICLDILKE W+ +  +  +LLS+ SLL +PN   PL  + A M+ +
Sbjct:   28 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSN 158          
The following BLAST results are available for this feature:
BLAST of DN134825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC7_YEAST8.821e-2739.19Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UE2NL_HUMAN2.567e-2643.88Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBC37_ARATH3.706e-2543.14Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBE2S_RANCA4.840e-2541.01Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBC21_ARATH4.840e-2540.14Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBCD4_DROME6.322e-2541.10Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UB2SB_XENLA6.322e-2541.01Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UBE2S_XENTR1.078e-2440.29Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBC7_SCHPO1.078e-2434.67Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBE2C_SPISO1.408e-2440.46Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]

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Properties
Property NameValue
Genbank descriptionwca01g09 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01g09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134825 ID=DN134825; Name=DN134825; organism=Citrus sinensis; type=EST; length=624bp
CGGCCGGGGCTCGACGATATTTGTGTTGAAGNAAACGAAGCAAGGGGTTG
ATAGAGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGT
TTCGCTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAG
GTCTTAAGGTTCGTTGTAGTTTCAATTTTAATAATCCCCTGAAGAGTCAT
GGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTC
CCACGTCTTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAA
GCAACAATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTT
AGTTACCATTCATTTTCCTCCTGATTATCCTTTCGAGCCCCCAAAGGTTG
CTTTTAGGACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCATC
TGTCTTGATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAA
GGTCCTGCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCTGACGACC
CTCTTGTACCGGAGATTGCCCACATGTACAAGTCCCACAAGGCCANATAT
GAATCCACGGCCAGGAGCTGGACA
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