DN134825

Overview
NameDN134825
Unique NameDN134825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.520e-31
Identity = 58/145 (40.00%), Postives = 93/145 (64.14%), Query Frame = 1
Query:  202 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXY-----ESTARSW 621
            A +R++++ K +++D P   SA P+ +++  W A I+GP+D+PY  G F + + F  +YP +PP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K HK+ Y     E+  +SW
Sbjct:    5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.520e-31
Identity = 58/145 (40.00%), Postives = 93/145 (64.14%), Query Frame = 1
Query:  202 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXY-----ESTARSW 621
            A +R++++ K +++D P   SA P+ +++  W A I+GP+D+PY  G F + + F  +YP +PP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K HK+ Y     E+  +SW
Sbjct:    5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 5.903e-31
Identity = 62/146 (42.47%), Postives = 91/146 (62.33%), Query Frame = 1
Query:  202 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXY-----ESTARSWT 624
            A +R++++ K LQ DPP   S  P+  ++  WQA I GP DS + G  F +++ F  +YP + P V F +K+FHPN+ ++GSICLDIL+ QWSP   I+ +L SI SLL DPNP+ P   E A +++ +K  Y     E   +SW+
Sbjct:    5 ARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQSWS 150          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.710e-31
Identity = 64/142 (45.07%), Postives = 92/142 (64.79%), Query Frame = 1
Query:  205 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            +KRI+KE++ ++ DP    +   V+E D+ H + T +GP  +PY GG F+V I  P +YPF+PPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y   +  +  TA  WT
Sbjct:    4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWT 145          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.315e-30
Identity = 57/145 (39.31%), Postives = 93/145 (64.14%), Query Frame = 1
Query:  202 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXY-----ESTARSW 621
            A +R++++ K +++D P   SA P+ +++  W A I+GP+D+PY  G F + + F  +YP +PP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A +++ HK+ Y     E+  +SW
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.718e-30
Identity = 58/145 (40.00%), Postives = 92/145 (63.45%), Query Frame = 1
Query:  202 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXY-----ESTARSW 621
            A +R++++ K +Q DPP   SA PV +++  W A I+GP+D+P+  G F + + F   YP +PP+V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK ++  Y     E+  +SW
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSW 149          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.243e-30
Identity = 59/145 (40.69%), Postives = 90/145 (62.07%), Query Frame = 1
Query:  202 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS-----HKAXYESTARSW 621
            A +R++++ K +Q DPP   SA PV +++  W A I+GP+D+P+  G F + +HF   YP +PP V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN       E +++YK      HK   E+  +SW
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSW 149          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.826e-30
Identity = 67/142 (47.18%), Postives = 91/142 (64.08%), Query Frame = 1
Query:  211 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            R+ +EL+ L K+PP          +M   +A I+G S SPY GG+F + I  P  YPFEPPK+ F T ++HPNI+S G ICLDIL    K  W PAL IS VL SI  L+++PNPDDPL+ +I+  +K ++A + S A+ WT
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWT 147          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.997e-30
Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = 1
Query:  202 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXY 600
            + KR++++ K L  DPP   S  P A+++  W A I GP+D+P+  G F + + F   YP +PP V F +K+FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPNP+ P   E A +Y+ +   Y
Sbjct:    5 SKKRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEY 137          
BLAST of DN134825 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.997e-30
Identity = 67/140 (47.86%), Postives = 91/140 (65.00%), Query Frame = 1
Query:  211 RILKELKDLQKDPPTS-CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFEPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSHKAXYESTARSWT 624
            RI KEL+D +++  +S     P ++++     TI GP  +PY GG F + I  P  YPFEPPK+ F TKV+HPNI+S +G+ICLDILK+QWSPALT+   L+SI +LL+ P P DP    +A  Y  +   + STAR WT
Sbjct:    6 RIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWT 145          
The following BLAST results are available for this feature:
BLAST of DN134825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC2_YEAST4.520e-3140.00Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_ASHGO4.520e-3140.00Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC2_DICDI5.903e-3142.47Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC1_YEAST7.710e-3145.07Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC2_KLULA1.315e-3039.31Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_NECHA1.718e-3040.00Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_NEUCR2.243e-3040.69Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBE2T_XENLA3.826e-3047.18Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC2_USTMA4.997e-3042.11Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC27_ARATH4.997e-3047.86Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionwca01g09 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01g09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134825 ID=DN134825; Name=DN134825; organism=Citrus sinensis; type=EST; length=624bp
CGGCCGGGGCTCGACGATATTTGTGTTGAAGNAAACGAAGCAAGGGGTTG
ATAGAGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGT
TTCGCTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAG
GTCTTAAGGTTCGTTGTAGTTTCAATTTTAATAATCCCCTGAAGAGTCAT
GGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTC
CCACGTCTTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCAA
GCAACAATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTTT
AGTTACCATTCATTTTCCTCCTGATTATCCTTTCGAGCCCCCAAAGGTTG
CTTTTAGGACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCATC
TGTCTTGATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAAA
GGTCCTGCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCTGACGACC
CTCTTGTACCGGAGATTGCCCACATGTACAAGTCCCACAAGGCCANATAT
GAATCCACGGCCAGGAGCTGGACA
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