DN134808

Overview
NameDN134808
Unique NameDN134808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134808_ssr350 microsatellite DN134808_ssr350:350..361. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10133 contig Csv1_Contig10133:1..595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134808 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.625e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 2
Query:   71 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 298
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of DN134808 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.228e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 2
Query:   71 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 298
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of DN134808 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.685e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 2
Query:   71 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 298
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of DN134808 vs. ExPASy Swiss-Prot
Match: RS27A_SOLTU (40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.580e-28
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 2
Query:  368 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 538
            LAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of DN134808 vs. ExPASy Swiss-Prot
Match: RS27A_SOLLC (40S ribosomal protein S27a OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.580e-28
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 2
Query:  368 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 538
            LAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of DN134808 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.740e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 2
Query:   71 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 298
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of DN134808 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.613e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 2
Query:  104 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 292
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of DN134808 vs. ExPASy Swiss-Prot
Match: RS27A_LUPAL (40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.550e-26
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 2
Query:  368 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 529
            LAVLQFYKVDDSGKVQRLRKECPN ECGAGTFMANHFDRHYCGKCG TYVYQKA
Sbjct:   24 LAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 77          
BLAST of DN134808 vs. ExPASy Swiss-Prot
Match: R27AB_ARATH (40S ribosomal protein S27a-2 OS=Arabidopsis thaliana GN=UBQ6 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 2
Query:  368 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAG 532
            LAVLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
BLAST of DN134808 vs. ExPASy Swiss-Prot
Match: R27AC_ARATH (40S ribosomal protein S27a-3 OS=Arabidopsis thaliana GN=UBQ5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.084e-25
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 2
Query:  368 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAG 532
            LAVLQFYK+D SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
The following BLAST results are available for this feature:
BLAST of DN134808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
UBIQ_LEIMA1.625e-3393.42Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA5.228e-3290.79Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP2.685e-2880.26Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
RS27A_SOLTU4.580e-2896.4940S ribosomal protein S27a OS=Solanum tuberosum GN... [more]
RS27A_SOLLC4.580e-2896.4940S ribosomal protein S27a OS=Solanum lycopersicum... [more]
UBIL_NPVAC1.740e-2776.32Ubiquitin-like protein OS=Autographa californica n... [more]
UBIQ_LUMTE6.613e-2795.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
RS27A_LUPAL9.550e-2696.3040S ribosomal protein S27a OS=Lupinus albus PE=3 S... [more]
R27AB_ARATH6.190e-2592.7340S ribosomal protein S27a-2 OS=Arabidopsis thalia... [more]
R27AC_ARATH8.084e-2590.9140S ribosomal protein S27a-3 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionwca01e10 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01e10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134808 ID=DN134808; Name=DN134808; organism=Citrus sinensis; type=EST; length=620bp
CTCTACGCAGCAAAAGTCTCTCATCCTTTTATTTCACTGAAATTTGCTGG
GTCTCTCCTCATTTGCAGCCATGCAGATCTTCGTGAAAACCCTAACGGGA
AAGACCATAACCCTAGAGGTCGAATCATCGGACACCATCGACAATGTCAA
GGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAGCAGCGTCTCA
TCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAAC
ATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCTCCGTGGTGGCGC
GAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAAGCACA
AGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGGTCGATGAT
TCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAATGCTGAGTGTGG
AGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACTACTGCGGCAAGT
GTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGATTGATCGAGATTA
GGTGGTTGTTTTGCTATTTTTAATTAGTATTAATTACTATGGTTTTTGTG
GTTCAAAAATTATGACTCTT
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