CX044018

Overview
NameCX044018
Unique NameCX044018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044018 vs. ExPASy Swiss-Prot
Match: DENR_MAGGR (Translation machinery-associated protein 22 OS=Magnaporthe grisea GN=TMA22 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.341e-16
Identity = 57/165 (34.55%), Postives = 83/165 (50.30%), Query Frame = -2
Query:  344 YCEFGPDLEKCKPWLIQNTPDLYPDL--AEELNSREAD-KVGEQLQSTGIXXXXXXXPKAEEVKHLPGGXXXXXXXXXXXXXXXXXXXXKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIEDGK 829
            YCE+G  ++KC+ WL +N  ++Y  +   E L +  A   V  Q ++           +A E KH                        K +T+V GLE FG++L   +K  GKKFATG+SV K  +  E+I VQGD+S +I EFI + + DVPE  I  ++D K
Sbjct:   26 YCEYGGTVKKCQDWLQRNNQEMYDRIWSPEALQAATAALSVEAQQRAEKDAKKKAAKAEAAEAKHAD-----KLKKSVVTVKRIERNKRKYVTSVSGLESFGLELKKVAKDFGKKFATGSSVTKVASGGEEIVVQGDVSDEIKEFIVEKYKDVPEDNIELVDDKK 185          
BLAST of CX044018 vs. ExPASy Swiss-Prot
Match: DENR_DICDI (Density-regulated protein homolog OS=Dictyostelium discoideum GN=denr PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.799e-15
Identity = 70/225 (31.11%), Postives = 97/225 (43.11%), Query Frame = -2
Query:  332 QPVRVL-YCAVCSLPAEYC-----------EFGP------------------------DLEKCKPWLIQNTPDLYPDLAEELNSREADKV----GEQLQSTGIXXXXXXXPKAE-EVKHLPGGXXXXXXXXXXXXXXXXXXXXKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPT--EKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIEDGKKVPA 877
            QP+ V+ YC +CSLP EYC           E GP                        D         +NT +   DL    +S+E   V     E  ++TG         K + EVK                         K +T + GLEL+G+KLSDA+K + KKF+ G SVVK  +    E ID+QGD   ++V+ I + +P VP + I+F+ED KKV A
Sbjct:   11 QPIVVVEYCKICSLPTEYCEYGPSAKQCLKENGPHPNNNKNTASGKDSSNTTATTTTTDTTTTTTTSTENTEEKLKDLKIVDDSKEVSHVDAGKSESKEATGEEKEKEKVSKKKKEVK------------PQIIIEVNQRNKRKHVTKITGLELYGIKLSDAAKVMAKKFSCGCSVVKSISNPNSEDIDIQGDFGEELVDLIEEKYPTVPLSEIYFLEDKKKVKA 223          
BLAST of CX044018 vs. ExPASy Swiss-Prot
Match: DENR_CAEEL (Density-regulated protein homolog OS=Caenorhabditis elegans GN=Y47D3A.21 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.186e-15
Identity = 51/184 (27.72%), Postives = 83/184 (45.11%), Query Frame = -2
Query:  341 PVRVLYCAVCSLPAEYCEFGPDLEKCKPWLIQNTPDLYPDL------AEELNSREADKVGEQLQSTGIXXXXXXXPKAEEVKHLPGGXXXXXXXXXXXXXXXXXXXXKCITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTWPDVPETAIFFIEDGKK 874
            P++++YC  CS+P EYC++    + C+ W  QN P+L   L      A + + ++  K G +   TG          A   +    G                    K +T +KGL  F + L  ASK   +KFA G+SV    T  ++I +QGD+  D+++ I + W  V +  I  + D K+
Sbjct:   23 PLKMVYCGQCSMPPEYCDYSGQTDVCRAWATQNAPELLEGLEISDEPAADGDEKKKQKRGGKGSKTG----------AAAAQAAASGGKKKGGGPQKVTLQREPRGKKSVTVIKGLATFDIDLKVASKLFAQKFACGSSV----TGADEIVIQGDVKDDLLDLIPEKWKQVTDEQIDDLGDKKR 192          
The following BLAST results are available for this feature:
BLAST of CX044018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DENR_MAGGR4.341e-1634.55Translation machinery-associated protein 22 OS=Mag... [more]
DENR_DICDI4.799e-1531.11Density-regulated protein homolog OS=Dictyostelium... [more]
DENR_CAEEL8.186e-1527.72Density-regulated protein homolog OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14H04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14H04-P8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044018 ID=CX044018; Name=CX044018; organism=Citrus sinensis; type=EST; length=878bp
CCTGAGAGAATCTTTTTATTACTTCTAAAAAATCAACTGAACAGAAACTG
AAATTACATGTAATGCTTCAATGAGAAAAGAAAAGAAAACACCACCAATA
TAGTCACTATATAATCATACCATTAACTTTAATACATATTTCAAACAAAA
ATTAACTATTTTGGTAACAAAGCAACACAGGACCAAATAAGAGGCGAAAA
GTCTCACAAGCCATGAAACCTGTCAAGCAGCCTTTACTTTGTGACTACGT
ATAAAAATCTCGTGAGAGACTTGTGAAGAGGAAGGAAGATACCATATTCC
ATTTTTCCATGAGCTACTATTTCAATCAAACAGCAGGCACTTTCTTTCCA
TCTTCGATGAAGAAGATTGCAGTTTCAGGAACATCAGGCCAGGTATCTGT
TATAAACTCCACGATGTCGTATGATATGTCTCCTTGGACATCAATTTGCT
CCTTCTCAGTTGGTCCCTTAACAACAGAGGCTCCTGTAGCAAACTTTTTC
CCAAGTTTCTTTGAAGCATCACTAAGTTTAACACCAAAAAGTTCCAGGCC
TTTAACTGTAGTGATACATTTCCGTTTGTTACGAACAACCTTTTCGATAA
CAACTTCTTTCTTATCCTTTTTCTTTATCTTTCCACCAGGAAGGTGTTTA
ACTTCTTCTGCCTTAGGAGCTGAAGAAGCAGGAGAGGAAATGCCAGTTGA
TTGTAACTGCTCGCCGACTTTATCGGCTTCCCTCGAATTTAACTCTTCGG
CAAGATCGGGGTAAAGGTCCGGTGTGTTTTGAATTAGCCAGGGCTTGCAT
TTCTCGAGATCGGGTCCGAATTCACAGTACTCCGCCGGTAAACTGCACAC
CGCACAGTACAGTACGCGAACCGGCTGC
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