DN134800

Overview
NameDN134800
Unique NameDN134800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.069e-74
Identity = 135/226 (59.73%), Postives = 163/226 (72.12%), Query Frame = 1
Query:   70 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            KFFVGGNWKCNGT E + K+VS LN                 F+++  VKSSL     V+AQN W+ KGGAFTGEISAE LV++G  WVILGHSERR ++ E +EF+G K AYALSQ LKV+AC+GE LE+REAG T DV   Q KA AD ++ W+N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S ++A+  RIIYGGSVN ANC ELA + D+DG
Sbjct:   48 KFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPP--FIYIDQVKSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDG 271          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.694e-73
Identity = 136/226 (60.18%), Postives = 160/226 (70.80%), Query Frame = 1
Query:   70 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            KFFVGGNWKCNGT + + K++S LN                 F+++  VKSSL     ++ QN WV KGGAFTGEIS E L +LG  WVILGHSERR ++ E +EF+G K AYALS+GL VIAC+GE LE+REAG T DV  AQ KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGSVNG N  ELA + D+DG
Sbjct:   65 KFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPP--FVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDG 288          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.529e-72
Identity = 135/226 (59.73%), Postives = 161/226 (71.24%), Query Frame = 1
Query:   70 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            KFFVGGNWKCNGT + + K+VS LN  +              FL+L  VKSSL     ++ QN WV KGGAFTGEIS E L ++G  WVILGHSERR ++ E ++F+G K AYAL++GL VIAC+GE LE+REAG T DV   Q KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQEVH  +R+WL  N S E+A+ TRIIYGGSVNG N  ELA + D+DG
Sbjct:   64 KFFVGGNWKCNGTKDLISKLVSDLNSAKLEPDVDVVVAPP--FLYLDQVKSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDG 287          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 1.299e-68
Identity = 133/229 (58.08%), Postives = 157/229 (68.56%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            MGRKF VGGNWK NG    +  +  VL  G               +L L   +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR I  ES+E + DKVA+AL++GLKVIAC+GETL++REAG T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK A+P QAQEVH  LRKW   N S +++AA RI YGGSV  ANC+ELAA+PD+DG
Sbjct:    1 MGRKFCVGGNWKMNGDKASIADLCKVLTTGPLNADTEVVVGCPAPYLTLA--RSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDG 227          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.876e-67
Identity = 128/227 (56.39%), Postives = 156/227 (68.72%), Query Frame = 1
Query:   67 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            RKFFVGGNWK NG  + + ++++ LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+ALS+GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDG
Sbjct:    4 RKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDG 228          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.200e-67
Identity = 127/228 (55.70%), Postives = 157/228 (68.86%), Query Frame = 1
Query:   64 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            GRKFFVGGNWK NG  + ++++ + LN  +               ++L   +S L P+  VAAQNC+    GAFTGEIS  M+ + G+ WVILGHSERR +  ES+E +G KVA+AL  GL VIAC+GE L++REAG T  VV AQTK IAD V  WS +VLAYEPVWAIGTGK A+P QAQEVH +LR+WL  N S  +A + RIIYGGSV G  CKELA+Q D+DG
Sbjct:    3 GRKFFVGGNWKMNGDKKSIEELANTLNSAKLNPDTEVVCGAPT--IYLDYARSKLDPNIDVAAQNCYKVAKGAFTGEISPAMIKDCGVKWVILGHSERRHVFGESDELIGQKVAHALENGLGVIACIGEKLDEREAGITEKVVFAQTKFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDG 228          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.179e-67
Identity = 127/227 (55.95%), Postives = 155/227 (68.28%), Query Frame = 1
Query:   67 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            RKFFVGGNWK NG  + + +++  LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDG
Sbjct:    5 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDYGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDG 229          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 4.179e-67
Identity = 127/227 (55.95%), Postives = 155/227 (68.28%), Query Frame = 1
Query:   67 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            RKFFVGGNWK NG  + + +++  LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDG
Sbjct:    5 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDG 229          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 4.179e-67
Identity = 127/227 (55.95%), Postives = 155/227 (68.28%), Query Frame = 1
Query:   67 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            RKFFVGGNWK NG  + + +++  LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDG
Sbjct:    5 RKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDG 229          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 254.603 bits (649), Expect = 4.179e-67
Identity = 127/227 (55.95%), Postives = 155/227 (68.28%), Query Frame = 1
Query:   67 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            RKFFVGGNWK NG  + + +++  LN  +              ++     +  L P   VAAQNC+    GAFTGEIS  M+ + G  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDG
Sbjct:    5 RKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDG 229          
The following BLAST results are available for this feature:
BLAST of DN134800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_SECCE2.069e-7459.73Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_ARATH8.694e-7360.18Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_FRAAN2.529e-7259.73Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_CULTA1.299e-6858.08Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIS_RABIT1.876e-6756.39Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPISB_DANRE3.200e-6755.70Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_PONAB4.179e-6755.95Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR4.179e-6755.95Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]
TPIS_MACMU4.179e-6755.95Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA4.179e-6755.95Triosephosphate isomerase OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionwca01d11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01d11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134800 ID=DN134800; Name=DN134800; organism=Citrus sinensis; type=EST; length=749bp
CGGCCGGGGNNNATAGAAAATAAAACATAACACACACACCGACACACGCA
CTCGTCGAACATGGGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCA
ATGGAACACCTGAAGAAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGT
CAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCT
GTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGG
CACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGT
GCGGAAATGCTCGTCAATTTGGGTATTCCTTGGGTCATTCTTGGTCATTC
TGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGGGGATAAGG
TTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAG
ACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTTGCTGCACA
AACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGG
CCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCG
CAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTTGCAAACAC
CAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGGATCCGTAA
ATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTGACGGATT
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