DN134800

Overview
NameDN134800
Unique NameDN134800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134800_ssr30 microsatellite DN134800_ssr30:30..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4526 contig Csv1_Contig4526:11..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 248.825 bits (634), Expect = 2.293e-65
Identity = 124/227 (54.63%), Postives = 153/227 (67.40%), Query Frame = 1
Query:   67 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            RKFFVGGNWK NG    + ++++ LN  +              ++     +  L P   VAAQNC+    GAFTGEI   M+ +LG  WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  W+ +VLAYEPVWAIGTGK ATP QAQEVH +LR WL  +    +A +TRIIYGGSV GA CKELA+QPDVDG
Sbjct:    5 RKFFVGGNWKMNGRKNNLGELINTLNAAKLPADTEVVCAPPTAYI--DFARQKLDPKIAVAAQNCYKVANGAFTGEIGPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGSVTGATCKELASQPDVDG 229          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.912e-65
Identity = 124/227 (54.63%), Postives = 154/227 (67.84%), Query Frame = 1
Query:   67 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            R+FFVGGNWK NG  E +++++S LN                  ++L   +S L     VAAQNC+    GAFTGEIS  M+ + G  WVILGHSERR +  E++E +G KVA+AL   L VIAC+GE LE+REAG+T DV+ AQT+ IA+ V  W  +VLAYEPVWAIGTGK ATP QAQEVH +LR W  AN S E++ + RIIYGGSV  ANC+ELA+Q DVDG
Sbjct:    4 RRFFVGGNWKMNGNKESLEELMSTLNTASLHEDTEVVCAAPS--IYLDFARSGLDSRISVAAQNCYKVAKGAFTGEISPAMIKDCGADWVILGHSERRHVFGENDELIGQKVAHALESDLSVIACIGEKLEEREAGTTEDVIFAQTQVIAENVMDWEKVVLAYEPVWAIGTGKTATPEQAQEVHEKLRAWFRANISEEVSDSLRIIYGGSVTAANCRELASQTDVDG 228          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.672e-65
Identity = 123/227 (54.19%), Postives = 156/227 (68.72%), Query Frame = 1
Query:   67 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            RKFFVGGNWK NG  + + +++  LN  +              +L    +K  + P F VAAQNC+    GAFTGEIS  M+ + G+ WVILGHSERR +  ES+E +G KV++ALS+GL V+AC+GE L++REAG T  VV   T+ IAD V  WS +VLAYEPVWAIGTGK A+P Q+QE+H +LRKWL  N S  +A + RIIYGGSV GA CKELA++PDVDG
Sbjct:    3 RKFFVGGNWKMNGDKKSLGELIQTLNAAKVPFTGEIVCAPPEAYLDFARLK--VDPKFGVAAQNCYKVSKGAFTGEISPAMIKDCGVTWVILGHSERRHVFGESDELIGQKVSHALSEGLGVVACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDG 227          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 1.138e-64
Identity = 126/230 (54.78%), Postives = 154/230 (66.96%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV-SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            MGRKF VGGNWK NG   ++ +IV+ L +G                ++L  VK+ +  +  VAAQNCW    GAFTGEIS  M+ ++G+ WVILGHSERR I  E +E V +KVA+AL  GLKVIAC+GETLE+RE+G T +VV  Q KA+   +   W NIVLAYEPVWAIGTGK ATP QAQ+VH  LR WL AN S  ++ A RI YGGSV  AN KELA+  D+DG
Sbjct:    1 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPA--IYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDG 228          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.377e-64
Identity = 125/230 (54.35%), Postives = 155/230 (67.39%), Query Frame = 1
Query:   67 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            RKFFVGGNWK NG+  + K ++  L+E                F++L  V+ SL  + HVAAQNC+    GAFTGEIS  M+ ++G  WVILGHSERR I NES+E V +KV +AL++GL V+AC+GETL +RE+G T +V   Q  AIA+++ S   W  +V+AYEPVWAIGTGKVA+P QAQEVH  LRKW   NT   +    RIIYGGSV  ANCKELA Q DVDG
Sbjct:    5 RKFFVGGNWKMNGSRADNKVLIHSLSEAHFCGDTEILIAAP--FVYLNEVRQSLAKEIHVAAQNCYKVPKGAFTGEISPSMIKDVGCDWVILGHSERRSIFNESDELVAEKVQHALAEGLSVVACIGETLSERESGKTEEVCVRQLNAIANKIKSIDEWKRVVVAYEPVWAIGTGKVASPGQAQEVHNFLRKWFKTNTPSGVDQQIRIIYGGSVTAANCKELAQQHDVDG 232          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.156e-63
Identity = 123/230 (53.48%), Postives = 155/230 (67.39%), Query Frame = 1
Query:   67 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            RKFFVGGNWK NG+ ++  K++ +L+E                 +FL  ++ SL+ + HVAAQNC+    GAFTGEIS  M+ ++G  WVILGHSERR I  ES+E + +KV +AL++GL VIAC+GETL +RE+  T +V   Q KAIA+++ S   W  +V+AYEPVWAIGTGKVATP QAQEVH  LRKW   N    +    RIIYGGSV  ANCKELA Q DVDG
Sbjct:    5 RKFFVGGNWKMNGSRDDNDKLLKLLSEAHFDDNTEVLIAPPS--VFLHEIRKSLKKEIHVAAQNCYKVSKGAFTGEISPAMIRDIGCDWVILGHSERRNIFGESDELIAEKVQHALAEGLSVIACIGETLSERESNKTEEVCVRQLKAIANKIKSADEWKRVVVAYEPVWAIGTGKVATPQQAQEVHNFLRKWFKTNAPNGVDEKIRIIYGGSVTAANCKELAQQHDVDG 232          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 236.498 bits (602), Expect = 1.178e-61
Identity = 119/229 (51.97%), Postives = 150/229 (65.50%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            M RKFFVGGN+K NG+ E +K I+  LN  +               ++L   +  ++ D  V AQN + KK GA+TGE SA+ L++ GI + + GHSERR I  ES+EFV DK  +AL QGL V+AC+GETL +REA  T++VV  Q  AIAD+V +WS IV+AYEPVWAIGTGK ATP QAQEVH E+RKW        +A   R+IYGGSVNG NCKE     D+DG
Sbjct:    1 MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQN-MYLITTRQQVKKDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDG 228          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.538e-61
Identity = 121/230 (52.61%), Postives = 153/230 (66.52%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            M RKFFVGGN+K NGT +++K IV  LN  Q               L+L  VK +L +P+  VAAQN + K  GAFTGEISA  L++LG+ WVILGHSERR  L ES+EF+  K  YAL  G+ VI C GE+ + R+AG T+  V  Q  A+A  ++ W N+V+AYEP+WAIGTG VAT  QAQEVH  +R WL  N S ++A  TRI+YGGSVN  NCK+LA + D+DG
Sbjct:    1 MARKFFVGGNFKMNGTRKDLKAIVDNLNNAQLDPNAEVVIAPPA--LYLDFVKQNLQKPNVEVAAQNVFNKPNGAFTGEISATQLLDLGVKWVILGHSERRNELGESDEFIASKTKYALDNGISVIWCCGESKDTRQAGETIKFVENQLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDG 228          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.901e-60
Identity = 115/179 (64.25%), Postives = 136/179 (75.98%), Query Frame = 1
Query:  202 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPD 738
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR I  ES+E + DKVA+AL++GLKVIAC+GETL++REAG T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S +++A+ RI YGGSV  ANC+ELAA+PD
Sbjct:   28 YLTLARSQLPDSVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVVAYEPVWAIGTGKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGSVTAANCRELAAKPD 206          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.789e-60
Identity = 118/229 (51.53%), Postives = 149/229 (65.07%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            M RKF VGGNWK NG  + + +I   L+                 +L     ++ L  +  +A QN +    GAFTGEIS  ML ++G  WVILGHSERR I  ES+  + +K  +AL++GLKVIAC+GETLE+REAG T +VVA Q  A A ++  W N+V+AYEPVWAIGTGK ATP QAQEVH  LR+WL  N S E++A+ RI YGGSV  AN KELA +PD+DG
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDG 227          
The following BLAST results are available for this feature:
BLAST of DN134800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PIG2.293e-6554.63Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIS_ORYLA3.912e-6554.63Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]
TPIS_LATCH6.672e-6554.19Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_BOMMO1.138e-6454.78Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]
TPIS_SCHJA7.377e-6454.35Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_SCHMA8.156e-6353.48Triosephosphate isomerase OS=Schistosoma mansoni G... [more]
TPIS_SCHPO1.178e-6151.97Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_NEUCR1.538e-6152.61Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_AEDTO2.901e-6064.25Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_DROYA3.789e-6051.53Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]

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Properties
Property NameValue
Genbank descriptionwca01d11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01d11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134800 ID=DN134800; Name=DN134800; organism=Citrus sinensis; type=EST; length=749bp
CGGCCGGGGNNNATAGAAAATAAAACATAACACACACACCGACACACGCA
CTCGTCGAACATGGGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCA
ATGGAACACCTGAAGAAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGT
CAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCT
GTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGG
CACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGT
GCGGAAATGCTCGTCAATTTGGGTATTCCTTGGGTCATTCTTGGTCATTC
TGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGGGGATAAGG
TTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAG
ACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTTGCTGCACA
AACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGG
CCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCG
CAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTTGCAAACAC
CAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGGATCCGTAA
ATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTGACGGATT
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