DN134800

Overview
NameDN134800
Unique NameDN134800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.789e-60
Identity = 118/229 (51.53%), Postives = 149/229 (65.07%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            M RKF VGGNWK NG  + + +I   L+                 +L     ++ L  +  +A QN +    GAFTGEIS  ML ++G  WVILGHSERR I  ES+  + +K  +AL++GLKVIAC+GETLE+REAG T +VVA Q  A A ++  W N+V+AYEPVWAIGTGK ATP QAQEVH  LR+WL  N S E++A+ RI YGGSV  AN KELA +PD+DG
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDG 227          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 1.102e-59
Identity = 117/229 (51.09%), Postives = 149/229 (65.07%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            M RKF VGGNWK NG  + + +I   L+                 +L     ++ L  +  +A QN +    GAFTGEIS  ML ++G  WVILGHSERR I  ES+  + +K  +AL++GLKVIAC+GETLE+REAG T +VVA Q  A A ++  W N+V+AYEPVWAIGTG+ ATP QAQEVH  LR+WL  N S E++A+ RI YGGSV  AN KELA +PD+DG
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDG 227          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.456e-59
Identity = 112/223 (50.22%), Postives = 151/223 (67.71%), Query Frame = 1
Query:   88 NWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLI--LNESNEFVGDKVAYALSQG-LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            NWKCN +  ++ ++VS  N                  ++L   + +LR DF  +AQN W+ KGGAFTGE+ A M+ ++G  WVILGHSERR I  L ES+  +  K AYAL    L VI C+GE LE+RE+G T+ V   Q +A++D +S WS++V+AYEPVWAIGTGKVATP QA++VH  +R WL  N SP++AA+TRI+YGGSV+ ANC+ LA QP++DG
Sbjct:    1 NWKCNLSKADIAELVSAFNAAPPIDAAHVQVVVAPPAVYLDSTRQALRADFDTSAQNAWISKGGAFTGELDAAMVKDVGAEWVILGHSERRHIAQLKESDHTIAMKAAYALQHASLGVIYCIGELLEERESGQTIAVCERQLQALSDAISDWSDVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAWLANNVSPQVAASTRILYGGSVSPANCESLAKQPNIDG 223          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.189e-59
Identity = 112/179 (62.57%), Postives = 133/179 (74.30%), Query Frame = 1
Query:  202 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPD 738
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR I  ES E + DK+ +AL++GLKVIAC+GETL++REA  T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S ++++A RI YGGSV  ANC+ELAA+PD
Sbjct:   28 YLSLARSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHALAEGLKVIACIGETLQEREAAKTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.079e-58
Identity = 116/216 (53.70%), Postives = 147/216 (68.06%), Query Frame = 1
Query:  100 NGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV-SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVD 744
            NG  ++V  IV  L +G                ++L  V+S +     VAAQNCW    GAFTGEIS  M+ ++G  WVILGHSERR I  E ++ V +KVA+AL  GLKVIAC+GETLE+REAG T +VV  QTKA+   + ++W+N+VLAYEPVWAIGTGK A+P QAQ+VH  LR WL +N SP++AA+ RI YGGSV  AN KEL+A PD+D
Sbjct:    2 NGDKKQVTDIVETLKKGPLDPNVEVVIGVPA--IYLAYVQSIVPGTISVAAQNCWKVAKGAFTGEISPAMIKDIGANWVILGHSERRTIFGEKDDLVAEKVAHALENGLKVIACIGETLEEREAGKTEEVVFRQTKALLPAIGNNWANVVLAYEPVWAIGTGKTASPQQAQDVHASLRNWLSSNASPDVAASVRIQYGGSVTAANAKELSAFPDID 215          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 225.328 bits (573), Expect = 2.715e-58
Identity = 117/231 (50.65%), Postives = 150/231 (64.94%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            M RKFFVGGN+K NGT + +  I++ LN  +               ++L L +        V+AQN + K  GAFTGE+S E L +  I W + GHSERR++L E +EFV  K   A++ GL VI C+GE+LE+REAG T+DVV  Q  A+A+ VS   W+ +V+AYEP+WAIGTGKVAT  QAQEVH  +RKWL    SPE A   R+IYGGSV   NC++LAAQPDVDG
Sbjct:    1 MPRKFFVGGNFKMNGTAKSITHIITNLNSAKLDPSTEIVIAPPA--IYLVLARQLANGQVAVSAQNVFDKPNGAFTGELSVEQLRDEKITWTLAGHSERRVLLREDDEFVARKTKAAINGGLNVILCIGESLEEREAGKTIDVVTRQLDAVAEEVSPAEWNKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDG 229          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_CAEEL (Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.631e-58
Identity = 119/229 (51.97%), Postives = 144/229 (62.88%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            M RKFFVGGNWK NG    V  IV+ LN                 +L     KS L+    VAAQNC+    GAFTGEIS  M+ +LG+ WVILGHSERR +  ES+  + +K  +AL  G+KV+ C+GE LE+REAG T DV   Q +AI D+  SW NIV+AYEPVWAIGTGK A+  QAQEVH  +R +L    SP +A ATRIIYGGSV   N  EL  +PD+DG
Sbjct:    1 MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYL--AYAKSKLKAGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDG 227          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.631e-58
Identity = 111/179 (62.01%), Postives = 133/179 (74.30%), Query Frame = 1
Query:  202 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPD 738
            +L L +S L     VAAQNC+    GAFTGEIS  ML +LG+ WVILGHSERR I  E++E + +KVA+AL +GLKVIAC+GETL++REAG T  V   QTKAIA +V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S +++ A RI YGGSV  ANC+ELA +PD
Sbjct:   28 YLSLARSLLPETIGVAAQNCYKVAKGAFTGEISPAMLKDLGLGWVILGHSERRAIFGETDELIAEKVAHALGEGLKVIACIGETLQEREAGQTEAVCFRQTKAIAAQVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSNAIRIQYGGSVTAANCRELAGKPD 206          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_ENTHI (Triosephosphate isomerase OS=Entamoeba histolytica GN=TPI PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 7.900e-58
Identity = 122/234 (52.14%), Postives = 152/234 (64.96%), Query Frame = 1
Query:   70 KFFVGGNWKCNGTPEEVKKIVS-VLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFH-----VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            KF VGGNWKCNGT   ++ +   V                   F+++  V+  L  + +     V+A+N W K G A+TGE+   MLV+  +P+VILGHSERR I +ESNE V +KV  A+  GLKVIAC+GET  QR A  T +VVAAQ KAI + +S  +W NI+LAYEPVWAIGTGK ATP QAQEVH  +RKW+  N S E+A ATRI YGGSVN ANC ELA + D+DG
Sbjct:    5 KFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANGANILVSAENAWTKSG-AYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDG 237          
BLAST of DN134800 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.900e-58
Identity = 117/231 (50.65%), Postives = 149/231 (64.50%), Query Frame = 1
Query:   61 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDG 747
            M R+FFVGGN+K NGT E +  I+  LNE +              +L L    +  +    V++QN + K  GAFTGEIS   L +  IPW I+GHSERR+IL E++EF+  KV  A+  G+ VI C+GETLE+REA  T++VV  Q  A A  ++   WS +V+AYEPVWAIGTGKVAT  QAQEVH  +RKWL    SPE +  TRIIYGGSV+  NC+ELA + DVDG
Sbjct:    1 MPRQFFVGGNFKMNGTAESITAIIKNLNEAKLDETTEVVVSPPALYLTLAQQVADEKKKVAVSSQNVFDKPNGAFTGEISVSQLQDAKIPWTIIGHSERRVILKETDEFIARKVKAAIDGGISVIFCIGETLEEREADKTIEVVTKQLNAAAKELTKEQWSKVVIAYEPVWAIGTGKVATTQQAQEVHAAIRKWLADAISPEASENTRIIYGGSVSEKNCRELAQERDVDG 231          
The following BLAST results are available for this feature:
BLAST of DN134800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DROSI3.789e-6051.53Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPIS_DROME1.102e-5951.09Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_GRAVE2.456e-5950.22Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_CULPI4.189e-5962.57Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_HELVI2.079e-5853.70Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_PARBA2.715e-5850.65Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_CAEEL4.631e-5851.97Triosephosphate isomerase OS=Caenorhabditis elegan... [more]
TPIS_ANOME4.631e-5862.01Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_ENTHI7.900e-5852.14Triosephosphate isomerase OS=Entamoeba histolytica... [more]
TPIS_ASPOR7.900e-5850.65Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionwca01d11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01d11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134800 ID=DN134800; Name=DN134800; organism=Citrus sinensis; type=EST; length=749bp
CGGCCGGGGNNNATAGAAAATAAAACATAACACACACACCGACACACGCA
CTCGTCGAACATGGGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCA
ATGGAACACCTGAAGAAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGT
CAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTCT
GTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGG
CACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGT
GCGGAAATGCTCGTCAATTTGGGTATTCCTTGGGTCATTCTTGGTCATTC
TGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGGGGATAAGG
TTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAG
ACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTTGCTGCACA
AACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGG
CCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCACTCCAGCG
CAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTTGCAAACAC
CAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGGATCCGTAA
ATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTGACGGATT
back to top