DN134795
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35 Identity = 74/131 (56.49%), Postives = 95/131 (72.52%), Query Frame = 1 Query: 100 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486 G A RKLK R+++RW+D Y + G K P G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L + Sbjct: 4 GKYAARKLKQDRQQRRWSDSEYARRERGLGAKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVR 134
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.142e-34 Identity = 74/131 (56.49%), Postives = 94/131 (71.76%), Query Frame = 1 Query: 100 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486 G A RKLK R++ RW+D Y + G K P G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L + Sbjct: 4 GKYAARKLKKDRQKHRWSDTDYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVR 134
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.491e-34 Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = 1 Query: 100 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSS-HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 483 G+ + L R+ +R AD +Y+K LG ++K G + AK IVLEKIG+EAKQPNSAIRK R QLI GKKI AFVP DG + YIE NDEV + GFG+KG +VGDIPG+RFKV KV VSL A+F Sbjct: 3 GLFSANNLIKSRKAKRLADTAYRKRALGTKYKHSVLGRAPQAKAIVLEKIGVEAKQPNSAIRKAVRCQLIATGKKITAFVPYDGSVTYIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIF 131
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.491e-34 Identity = 73/130 (56.15%), Postives = 98/130 (75.38%), Query Frame = 1 Query: 100 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALF 483 G+ A RKL+ R + RW+ + +K LG + K P G+ A+GIVLEK+G+EA+QPNSA+RKC RVQL KNGK + AFVP DG +NYI+E+DEV+I G G +G ++GDIPGVR+KV+ V+GVSL AL+ Sbjct: 9 GLFAARKLRRKRLKFRWSQREFKIKMLGLKKKHDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLAKNGKVVTAFVPFDGGINYIDEHDEVIIEGIGGPRGRSMGDIPGVRYKVIMVNGVSLKALY 138
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.491e-34 Identity = 74/131 (56.49%), Postives = 94/131 (71.76%), Query Frame = 1 Query: 100 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486 G A RKLK R++ RW+D Y + G K P G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L + Sbjct: 4 GKYAARKLKQDRQKHRWSDSDYARRARGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVR 134
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34 Identity = 77/131 (58.78%), Postives = 95/131 (72.52%), Query Frame = 1 Query: 100 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486 G AGRKLK R++ RW+D YK+ L E P G+ AKGIVLEKI +EAKQPNSA+RK RVQLIKNGK + AF P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQAKGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVK 139
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34 Identity = 73/131 (55.73%), Postives = 96/131 (73.28%), Query Frame = 1 Query: 100 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486 G+ A +KLKS R++ +W D YK+ L + K P G+ A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+I AF P DG + +I+E+DEV++ G G G ++GDIPGVR+KV KV+ VSL + K Sbjct: 3 GLFAAKKLKSKRQKFKWKDTHYKRRSLRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIGGPSGRSMGDIPGVRWKVTKVNNVSLQEMVK 133
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_THEPD (30S ribosomal protein S12P OS=Thermofilum pendens (strain Hrk 5) GN=rps12p PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 5.668e-34 Identity = 72/138 (52.17%), Postives = 99/138 (71.74%), Query Frame = 1 Query: 79 PTXXKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486 P RGM A RKL+ R++ RW+D YK+ L + K P G+ A+GIV+EK+GIE++QPNSA+RKC RVQL+KNGK + AF+P DG L ++ E+DEV+I G G +G A GD+PGVR+KV+KV+GVSL + + Sbjct: 2 PGSKSPRGMFAARKLELKRKKFRWSDLEYKRRILQLKKKVDPLEGAPQARGIVVEKVGIESRQPNSAVRKCVRVQLLKNGKVVTAFLPGDGALLFVNEHDEVVIEGIGGPEGRAYGDLPGVRWKVIKVNGVSLKEILR 139
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 5.668e-34 Identity = 76/131 (58.02%), Postives = 95/131 (72.52%), Query Frame = 1 Query: 100 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486 G AGRKLK R++ RW+D YK+ L E P G+ A+GIVLEKI +EAKQPNSA+RK RVQLIKNGK + AF P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVK 139
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 1.263e-33 Identity = 76/138 (55.07%), Postives = 95/138 (68.84%), Query Frame = 1 Query: 79 PTXXKTRGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486 P G AGRKLK R++ RW+D YK+ L E P G+ A+GIVLEKI +EAKQPNS +RK RVQLIKNGK + AF P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K Sbjct: 2 PGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVK 139 The following BLAST results are available for this feature:
BLAST of DN134795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >DN134795 ID=DN134795; Name=DN134795; organism=Citrus sinensis; type=EST; length=491bpback to top |