DN134795

Overview
NameDN134795
Unique NameDN134795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:15..504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 74/131 (56.49%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  100 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            G  A RKLK  R+++RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L +
Sbjct:    4 GKYAARKLKQDRQQRRWSDSEYARRERGLGAKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVR 134          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.142e-34
Identity = 74/131 (56.49%), Postives = 94/131 (71.76%), Query Frame = 1
Query:  100 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            G  A RKLK  R++ RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L +
Sbjct:    4 GKYAARKLKKDRQKHRWSDTDYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVR 134          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.491e-34
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = 1
Query:  100 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSS-HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 483
            G+ +   L   R+ +R AD +Y+K  LG ++K    G +  AK IVLEKIG+EAKQPNSAIRK  R QLI  GKKI AFVP DG + YIE NDEV + GFG+KG +VGDIPG+RFKV KV  VSL A+F
Sbjct:    3 GLFSANNLIKSRKAKRLADTAYRKRALGTKYKHSVLGRAPQAKAIVLEKIGVEAKQPNSAIRKAVRCQLIATGKKITAFVPYDGSVTYIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIF 131          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.491e-34
Identity = 73/130 (56.15%), Postives = 98/130 (75.38%), Query Frame = 1
Query:  100 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALF 483
            G+ A RKL+  R + RW+ + +K   LG + K  P  G+  A+GIVLEK+G+EA+QPNSA+RKC RVQL KNGK + AFVP DG +NYI+E+DEV+I G  G +G ++GDIPGVR+KV+ V+GVSL AL+
Sbjct:    9 GLFAARKLRRKRLKFRWSQREFKIKMLGLKKKHDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLAKNGKVVTAFVPFDGGINYIDEHDEVIIEGIGGPRGRSMGDIPGVRYKVIMVNGVSLKALY 138          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.491e-34
Identity = 74/131 (56.49%), Postives = 94/131 (71.76%), Query Frame = 1
Query:  100 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            G  A RKLK  R++ RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L +
Sbjct:    4 GKYAARKLKQDRQKHRWSDSDYARRARGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVR 134          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34
Identity = 77/131 (58.78%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  100 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  AKGIVLEKI +EAKQPNSA+RK  RVQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQAKGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVK 139          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34
Identity = 73/131 (55.73%), Postives = 96/131 (73.28%), Query Frame = 1
Query:  100 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            G+ A +KLKS R++ +W D  YK+  L  + K  P  G+  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+I AF P DG + +I+E+DEV++ G  G  G ++GDIPGVR+KV KV+ VSL  + K
Sbjct:    3 GLFAAKKLKSKRQKFKWKDTHYKRRSLRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIGGPSGRSMGDIPGVRWKVTKVNNVSLQEMVK 133          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_THEPD (30S ribosomal protein S12P OS=Thermofilum pendens (strain Hrk 5) GN=rps12p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.668e-34
Identity = 72/138 (52.17%), Postives = 99/138 (71.74%), Query Frame = 1
Query:   79 PTXXKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            P     RGM A RKL+  R++ RW+D  YK+  L  + K  P  G+  A+GIV+EK+GIE++QPNSA+RKC RVQL+KNGK + AF+P DG L ++ E+DEV+I G  G +G A GD+PGVR+KV+KV+GVSL  + +
Sbjct:    2 PGSKSPRGMFAARKLELKRKKFRWSDLEYKRRILQLKKKVDPLEGAPQARGIVVEKVGIESRQPNSAVRKCVRVQLLKNGKVVTAFLPGDGALLFVNEHDEVVIEGIGGPEGRAYGDLPGVRWKVIKVNGVSLKEILR 139          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.668e-34
Identity = 76/131 (58.02%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  100 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNSA+RK  RVQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVK 139          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.263e-33
Identity = 76/138 (55.07%), Postives = 95/138 (68.84%), Query Frame = 1
Query:   79 PTXXKTRGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            P      G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K
Sbjct:    2 PGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVK 139          
The following BLAST results are available for this feature:
BLAST of DN134795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_HALWD8.744e-3556.4930S ribosomal protein S12P OS=Haloquadratum walsby... [more]
RS12_HALMA1.142e-3456.4930S ribosomal protein S12P OS=Haloarcula marismort... [more]
RS23_ENCCU1.491e-3458.1440S ribosomal protein S23 OS=Encephalitozoon cunic... [more]
RS12_STAMF1.491e-3456.1530S ribosomal protein S12P OS=Staphylothermus mari... [more]
RS12_NATPD1.491e-3456.4930S ribosomal protein S12P OS=Natronomonas pharaon... [more]
RS12_THECE2.544e-3458.7830S ribosomal protein S12P OS=Thermococcus celer G... [more]
RS12_METTH2.544e-3455.7330S ribosomal protein S12P OS=Methanobacterium the... [more]
RS12_THEPD5.668e-3452.1730S ribosomal protein S12P OS=Thermofilum pendens ... [more]
RS12_PYRKO5.668e-3458.0230S ribosomal protein S12P OS=Pyrococcus kodakarae... [more]
RS12_PYRHO1.263e-3355.0730S ribosomal protein S12P OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionwca01d05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01d05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134795 ID=DN134795; Name=DN134795; organism=Citrus sinensis; type=EST; length=491bp
GGCCGGGGNNTCGCGGCGTCCTCTTGCACTCTCAAGCTCCAAAGTCGTTC
GTTACAGTAAAAAATCCTCTTCGTAACGCCAACANNNNGGAAGACACGTG
GAATGGGAGCTGGTCGCAAGCTGAAGAGCCACCGCAGAAGACAAAGGTGG
GCTGATAAGTCATACAAGAAATCCCACCTTGGCAATGAATGGAAGAAGCC
ATTTGCTGGCTCTTCCCATGCAAAAGGCATTGTTCTTGAGAAAATCGGTA
TCGAGGCAAAGCAGCCCAACTCTGCTATCAGAAAATGCGCTCGAGTTCAG
CTGATCAAGAATGGAAAGAAGATTGCAGCTTTCGTACCAAACGATGGTTG
TTTGAACTACATTGAAGAAAATGACGAGGTACTTATTGCAGGATTTGGTC
GAAAGGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTC
AAGGTTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAA
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