DN134795

Overview
NameDN134795
Unique NameDN134795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:15..504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_METLZ (30S ribosomal protein S12P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps12p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.218e-29
Identity = 67/127 (52.76%), Postives = 87/127 (68.50%), Query Frame = 1
Query:   97 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSL 471
            +G  A R L    ++ RW+D  Y +  L  + K  P  G+   + IVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF   DG +N+I+E+DEV I G  GR G ++GDIPGVRF V  V+GVSL
Sbjct:    3 QGKFAARNLVRTAKKFRWSDSVYSRRALKLKLKADPLEGAPIGRAIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVTICGIGGRAGRSMGDIPGVRFVVSGVNGVSL 129          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.489e-29
Identity = 68/132 (51.52%), Postives = 87/132 (65.91%), Query Frame = 1
Query:   97 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            +G  AGRKL   RR  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L +
Sbjct:    8 KGEFAGRKLLLKRRASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVR 139          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.223e-28
Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = 1
Query:   97 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            +G  AGRKL   R+  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L +
Sbjct:    8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVLVGKNSIRELVR 139          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.223e-28
Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = 1
Query:   97 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            +G  AGRKL   R+  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L +
Sbjct:    8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVR 139          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.223e-28
Identity = 68/133 (51.13%), Postives = 91/133 (68.42%), Query Frame = 1
Query:   97 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG--RKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            RG  AGRKL+  R+  RW D +Y +  L  + K  P  G+  A+GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+ + AF P +  +N+I+E+DEV+I G G  +   A GDIPGV++KV+ V   SL  L +
Sbjct:    8 RGEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVIMVGRNSLRELVR 140          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.086e-28
Identity = 66/132 (50.00%), Postives = 87/132 (65.91%), Query Frame = 1
Query:   97 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            +G  AGRKL   R+  RW    Y    LG + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KV+ V   S+  L +
Sbjct:    8 KGEFAGRKLLLKRKATRWQHYKYVNRELGLKVKADPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVLMVGKNSIRELVR 139          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_META3 (30S ribosomal protein S12P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps12p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.927e-28
Identity = 65/132 (49.24%), Postives = 85/132 (64.39%), Query Frame = 1
Query:   97 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            +G  AGRK+   R+  RW    Y    L   E   P  G+   +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P +  +N+I+E+DEV+I G  G  G A GDIPGVRF+VV V   S+  L +
Sbjct:    8 KGEFAGRKIVLKRKESRWHHYKYVNKALKLKEKSDPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRFRVVMVGKNSMRELVR 139          
BLAST of DN134795 vs. ExPASy Swiss-Prot
Match: RS12_NANEQ (30S ribosomal protein S12P OS=Nanoarchaeum equitans GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.550e-26
Identity = 67/131 (51.15%), Postives = 84/131 (64.12%), Query Frame = 1
Query:  100 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFK 486
            G+ AGRKLK  R++ RW D  Y +  L  + K  P  G+  A GIVLEK  +E +QPNS   K  RVQL KNGK + AF P DG +  I+E+DEVLI G  GR+G ++GDIPGVR+KV  V+G  L  L K
Sbjct:    5 GLFAGRKLKKIRKKFRWNDYRYVRRMLRIKEKYDPLEGAPMASGIVLEKTDVERRQPNSGRIKVVRVQLKKNGKVVTAFTPGDGAIKVIDEHDEVLIVGIRGRQGRSMGDIPGVRYKVYLVNGQPLELLRK 135          
The following BLAST results are available for this feature:
BLAST of DN134795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_METLZ3.218e-2952.7630S ribosomal protein S12P OS=Methanocorpusculum l... [more]
RS12_METM75.489e-2951.5230S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METMP1.223e-2850.7630S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METM51.223e-2850.7630S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METJA1.223e-2851.1330S ribosomal protein S12P OS=Methanocaldococcus j... [more]
RS12_METVS2.086e-2850.0030S ribosomal protein S12P OS=Methanococcus vannie... [more]
RS12_META37.927e-2849.2430S ribosomal protein S12P OS=Methanococcus aeolic... [more]
RS12_NANEQ2.550e-2651.1530S ribosomal protein S12P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionwca01d05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01d05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134795 ID=DN134795; Name=DN134795; organism=Citrus sinensis; type=EST; length=491bp
GGCCGGGGNNTCGCGGCGTCCTCTTGCACTCTCAAGCTCCAAAGTCGTTC
GTTACAGTAAAAAATCCTCTTCGTAACGCCAACANNNNGGAAGACACGTG
GAATGGGAGCTGGTCGCAAGCTGAAGAGCCACCGCAGAAGACAAAGGTGG
GCTGATAAGTCATACAAGAAATCCCACCTTGGCAATGAATGGAAGAAGCC
ATTTGCTGGCTCTTCCCATGCAAAAGGCATTGTTCTTGAGAAAATCGGTA
TCGAGGCAAAGCAGCCCAACTCTGCTATCAGAAAATGCGCTCGAGTTCAG
CTGATCAAGAATGGAAAGAAGATTGCAGCTTTCGTACCAAACGATGGTTG
TTTGAACTACATTGAAGAAAATGACGAGGTACTTATTGCAGGATTTGGTC
GAAAGGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTC
AAGGTTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAA
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