DN134792

Overview
NameDN134792
Unique NameDN134792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.726e-21
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 284
            L VGFV+S+  N TL +K+L  GDVFV P GL+ F  NIGKTNA A  A+ SQ PG +++ D VFG+ P IDP  L KAF LD  IV+ L+  F
Sbjct:  125 LLVGFVSSNDYNYTLFSKILYPGDVFVHPIGLVQFHANIGKTNAVAIGAVGSQNPGYISVGDAVFGSKPPIDPKILAKAFALDINIVRYLRKVF 218          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.355e-21
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFINGN 296
            LYVGFVTS+  NNTL +KVL KGDVFVFP GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I  + L KAFQ++   +  LQ +F   N
Sbjct:  126 LYVGFVTSNP-NNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQAQFWENN 223          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL12_ARATH (Putative germin-like protein subfamily 1 member 2 OS=Arabidopsis thaliana GN=At3g04150 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.084e-20
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 284
            L VGFV+S+  N TL +K+L  GDVF FP GL+ F  N GKT+A A   + SQ PG + I D VFG+NP IDP  L KAF LD  IV+ +Q  F
Sbjct:  128 LSVGFVSSNDYNYTLFSKILYPGDVFAFPIGLVQFHANTGKTHAVAIGVVGSQDPGVIPIGDAVFGSNPLIDPKLLAKAFALDVNIVRHVQRVF 221          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.416e-20
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFINGN 296
            L+VGFVTS+  NNTL +KVLNKGDVFVFP GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I  + L KAFQ+    +  LQ +F   N
Sbjct:  125 LHVGFVTSNP-NNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVITIANAVFGSKPPISDEVLAKAFQVGKGTIDWLQAQFWENN 222          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL811_ORYSJ (Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.415e-20
Identity = 55/99 (55.56%), Postives = 67/99 (67.68%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFINGN 296
            LYVGFVTS+  +N   +KVLNKGDVFVFP GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I  D L KAFQ++   +  LQ +F   N
Sbjct:  125 LYVGFVTSNP-DNKFFSKVLNKGDVFVFPVGLIHFQFNPNPYKPAVAIAALSSQNPGAITIANAVFGSKPPISDDVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.380e-20
Identity = 51/99 (51.52%), Postives = 69/99 (69.70%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFINGN 296
            LYVGFVTS+   N L +KV++KGDVFVFP+ +IHFQ N+     A A SAL+SQ PG +TIA  +FG+ P I  D L KAFQ++ K++  L+++F   N
Sbjct:  127 LYVGFVTSNP--NRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGSTPPISDDVLVKAFQVEKKVIDWLKSQFSENN 223          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.026e-20
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFINGN 296
            LYVGFVTS+   N L +KV++KGD FVFP+ +IHFQ N+     A A S+LNSQ PG +TIA  VFG+ P I  D L KAFQ++ K++  L+++F   N
Sbjct:  127 LYVGFVTSNP--NRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVITIASAVFGSKPPISDDVLTKAFQVEKKVIDWLKSQFWESN 223          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL812_ORYSJ (Germin-like protein 8-12 OS=Oryza sativa subsp. japonica GN=Os08g0231400 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.026e-20
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFINGN 296
            LYVGFVTS+   N L +KV+ KGDVFVFP+ +IHFQ N+     A A SAL+SQ PG +TIA  VFG+ P I  D L KAFQ++ K++  LQ++F   N
Sbjct:  127 LYVGFVTSNP--NKLFSKVVCKGDVFVFPKAMIHFQMNLDHDKPAVAQSALSSQNPGVITIASAVFGSQPPISDDVLTKAFQVEKKLIDWLQSQFWENN 223          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.044e-19
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 284
            L VGFVT+    N L  + ++KG+VFVFP+GL+HFQ N G T+A A +A NSQ PG  +IADT+FGA P +  D L +AFQ+D  +V+ +++KF
Sbjct:  128 LDVGFVTTA---NKLFTRTVSKGEVFVFPRGLVHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFGAAPPLPSDTLARAFQVDGGMVESIKSKF 218          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 3
Query:    3 LYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 284
            L VGFVTS+Q    N    K+L  GDVFVFPQGLIHFQ N G   A A +AL+SQ PG +TIA+ VFG+ P I  D L KAF +D   V  +Q KF
Sbjct:  131 LLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVFGSTPPILDDVLAKAFMIDKDQVDWIQAKF 226          
The following BLAST results are available for this feature:
BLAST of DN134792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
GL13_ARATH3.726e-2154.26Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
GL86_ORYSJ6.355e-2156.57Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]
GL12_ARATH1.084e-2053.19Putative germin-like protein subfamily 1 member 2 ... [more]
GL89_ORYSJ1.416e-2056.57Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]
GL811_ORYSJ2.415e-2055.56Germin-like protein 8-11 OS=Oryza sativa subsp. ja... [more]
GL83_ORYSJ5.380e-2051.52Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL84_ORYSJ7.026e-2051.52Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL812_ORYSJ7.026e-2053.54Germin-like protein 8-12 OS=Oryza sativa subsp. ja... [more]
GL32_ORYSJ2.044e-1951.06Putative germin-like protein 3-2 OS=Oryza sativa s... [more]
GL41_ORYSJ5.948e-1955.21Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionwca01c12 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01c12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134792 ID=DN134792; Name=DN134792; organism=Citrus sinensis; type=EST; length=587bp
CTCTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAACACACTCATC
GCAAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGAT
TCACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCCTATTCTGCTC
TAAACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACACAGTCTTTGGA
GCCAATCCTTCAATCGATCCCGATTTTCTTGGCAAGGCATTCCAGTTGGA
CCCAAAGATAGTGAAAGACCTTCAAAATAAGTTCATTAATGGCAATTAGG
AGAAGGAATTAATGAGCTTTAATATAAATGGCCTCTTCACTAGTGGCTGT
ATTACTTTATCTCCAGATTATCATATCTTAATTAATGTAATAAAAGAGGT
CTCTCATGAACCTCTCTCCAGGCTGACTGTGGCCATGTAATAAACATAAT
TGTTATTGTTTTTATTTAGCAGCTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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