DN134792

Overview
NameDN134792
Unique NameDN134792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.015e-18
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 284
            ++VGF+T+   NNTL +KVLN G++FV P+GL+HFQ+N+GK  A   ++ NSQ PG   +  T+FG+NP+I    L K F+ D   V  L++KF
Sbjct:  128 VFVGFLTT---NNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPNAVLTKTFRTDDVTVNKLKSKF 218          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.952e-18
Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 284
            ++VGF+++   NNTL +KVLN G+ FV P+GL+HFQ+N+G+  A   +A NSQ PG V +  T+FG+ P I    L +AF+ D   V++L++KF
Sbjct:  128 VFVGFLST---NNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGSKPEIPNAVLTRAFRTDDTTVQNLKSKF 218          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: NEC1_NICPL (Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.589e-18
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 284
            L VGF+T+    N L++K + KG+VFVFP+GL+HFQ N GK  AA  SA NSQ PG  +I  T+FGA+P++  D L + FQ++ + V+ +++KF
Sbjct:  133 LDVGFITTA---NVLVSKQITKGEVFVFPRGLVHFQKNNGKIPAAVVSAFNSQLPGTQSIPITLFGASPTVPDDVLAQTFQINIEDVQQIKSKF 223          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.499e-17
Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFI 287
            L VGFVT+    N L  + + KG+VFVFP+GL+HFQ N G T A A +ALNSQ PG  +IA  +FGA P +  D L +AFQ+D  +V+ +++KF+
Sbjct:  128 LDVGFVTTA---NKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAFQVDGGMVEFIKSKFV 219          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: NEC1_NICLS (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.263e-17
Identity = 44/94 (46.81%), Postives = 65/94 (69.15%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 284
            L VGF+T+    N L++K + KG+VFVFP+GL+HFQ N G+  AA  SA NSQ PG  +I  T+FGA+P +  D L + FQ++ + V+ +++KF
Sbjct:  133 LDVGFITTA---NVLVSKKIIKGEVFVFPRGLVHFQKNNGEVPAAVISAFNSQLPGTQSIPITLFGASPPVPDDVLAQTFQINTEDVQQIKSKF 223          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.609e-16
Identity = 51/96 (53.12%), Postives = 60/96 (62.50%), Query Frame = 3
Query:    6 YVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGK-AFQLDPKIVKDLQNKF 284
            YVGFVTS+  +  N L AKVLNKGDVFVFPQGLIHFQ NIG       S L+SQ PG +TIA+ VFG      P+ L +  F L P I   + + F
Sbjct:  128 YVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVFG------PEHLSQLMFLLRPSISMRIWSSF 217          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.609e-16
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFING 293
            L VG + +  + N   +KV+  G+ FV P+GL+HFQFN+GKT A    + NSQ PG V +  T+FG+NP I    L KA ++D  +V+ L++KF  G
Sbjct:  132 LLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDTGVVELLKSKFTGG 228          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNK 281
            L VGF+T+    N L  K +  G+VFVFP+GL+HFQ N GK+ A+  SA NSQ PG  ++A T+F A P++  D L K FQ+  K+V  ++ +
Sbjct:  125 LEVGFITTA---NKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFAAEPALPEDVLTKTFQVGSKMVDKIKER 214          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.039e-16
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFING 293
            L VG + +    N   +KV+  G+ FV P+GL+HFQFN+GKT A    + NSQ PG V +  T+FG+NP I    L KA ++D  +V+ L++KF  G
Sbjct:  132 LLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTGG 228          
BLAST of DN134792 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.039e-16
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 3
Query:    3 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFING 293
            L VG + +    N   +KV+  G+ FV P+GL+HFQFN+GKT A    + NSQ PG V +  T+FG+NP I    L KA ++D  +V+ L++KF  G
Sbjct:  130 LLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTGG 226          
The following BLAST results are available for this feature:
BLAST of DN134792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
GLT2_ARATH1.015e-1846.81Germin-like protein subfamily T member 2 OS=Arabid... [more]
GLT1_ARATH2.952e-1845.74Germin-like protein subfamily T member 1 OS=Arabid... [more]
NEC1_NICPL8.589e-1847.87Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE... [more]
GL13_ORYSJ2.499e-1749.47Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
NEC1_NICLS4.263e-1746.81Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana s... [more]
GLP1_MESCR3.609e-1653.13Germin-like protein OS=Mesembryanthemum crystallin... [more]
GL34_ORYSJ3.609e-1643.30Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL22_ARATH6.155e-1645.16Germin-like protein subfamily 2 member 2 OS=Arabid... [more]
GL36_ORYSJ8.039e-1643.30Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL35_ORYSJ8.039e-1643.30Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionwca01c12 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01c12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134792 ID=DN134792; Name=DN134792; organism=Citrus sinensis; type=EST; length=587bp
CTCTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAACACACTCATC
GCAAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGAT
TCACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCCTATTCTGCTC
TAAACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACACAGTCTTTGGA
GCCAATCCTTCAATCGATCCCGATTTTCTTGGCAAGGCATTCCAGTTGGA
CCCAAAGATAGTGAAAGACCTTCAAAATAAGTTCATTAATGGCAATTAGG
AGAAGGAATTAATGAGCTTTAATATAAATGGCCTCTTCACTAGTGGCTGT
ATTACTTTATCTCCAGATTATCATATCTTAATTAATGTAATAAAAGAGGT
CTCTCATGAACCTCTCTCCAGGCTGACTGTGGCCATGTAATAAACATAAT
TGTTATTGTTTTTATTTAGCAGCTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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