DN134772

Overview
NameDN134772
Unique NameDN134772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134772_ssr12 microsatellite DN134772_ssr12:12..29. BLAST: Citrus ESTs to Prunus persica proteins V1
DN134772_ssr158 microsatellite DN134772_ssr158:158..167. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5666 contig Csv1_Contig5666:1..497. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 4.972e-33
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 2
Query:  212 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKTKRG AAL R
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDR 101          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 4.972e-33
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 2
Query:  212 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKTKRG AAL R
Sbjct:    3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDR 97          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 4.972e-33
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 2
Query:  212 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKTKRG AAL R
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDR 101          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 4.972e-33
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 2
Query:  212 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKTKRG AAL R
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDR 101          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.498e-32
Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 2
Query:  191 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            +G   K +V+D R H+LGRLA+++AK LL G KVV VRCE+I +SG   R K+K+M FLRKR N  P+ GP HFRAP+KI W+TVRGMIPHKT+RG +AL R
Sbjct:    2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRR 103          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.089e-31
Identity = 61/102 (59.80%), Postives = 77/102 (75.49%), Query Frame = 2
Query:  191 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            +G   K +V+D R H+LGRLA+++AK LL G KVV VRCE++ +SG   R K+K+M FLRKR N  P+ GP HFRAP+KI W+TVRGMIPHKT+RG  AL R
Sbjct:    2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRR 103          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.654e-31
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2
Query:  191 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            +G+  + VV+D R H+LGRLAS+VAK LL G KV  VRCEE+ +SG   R K+K++ +LRKR N  P+ GP HFRAP++IF++ VRGMIPHKTKRG AALAR
Sbjct:    2 TGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALAR 103          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.310e-30
Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 2
Query:  194 GICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAAL 490
            G+  + +++D ++H+LGRLASIVAK+LL G KVV +R EEI +SG   R K+KYM FLRKR N  P+ G  H+RAP KIFWRTVRGM+PHKT RG  AL
Sbjct:    2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEAL 100          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.940e-30
Identity = 62/87 (71.26%), Postives = 71/87 (81.61%), Query Frame = 2
Query:  236 MLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALAR 496
            +LGRLA+IVA E+L G KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKTKRG AAL R
Sbjct:    1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALER 87          
BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.688e-28
Identity = 59/95 (62.11%), Postives = 73/95 (76.84%), Query Frame = 2
Query:  206 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAAL 490
            K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT RG AAL
Sbjct:    6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAAL 100          
The following BLAST results are available for this feature:
BLAST of DN134772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL13A_PONAB4.972e-3369.4760S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
RL13A_PIG4.972e-3369.4760S ribosomal protein L13a (Fragment) OS=Sus scrof... [more]
RL13A_MACFA4.972e-3369.4760S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_HUMAN4.972e-3369.4760S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]
RL13A_SPOFR5.498e-3260.7860S ribosomal protein L13a OS=Spodoptera frugiperd... [more]
RL13A_CHOPR2.089e-3159.8060S ribosomal protein L13a OS=Choristoneura parall... [more]
RL13A_DROME4.654e-3160.7860S ribosomal protein L13a OS=Drosophila melanogas... [more]
RL13A_CAEEL2.310e-3060.6160S ribosomal protein L13a OS=Caenorhabditis elega... [more]
RL13A_SALTR3.940e-3071.2660S ribosomal protein L13a (Fragment) OS=Salmo tru... [more]
RL16B_SCHPO3.688e-2862.1160S ribosomal protein L16-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionwca01b03 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01b03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134772 ID=DN134772; Name=DN134772; organism=Citrus sinensis; type=EST; length=497bp
TACGGCCGGGGGAGAGAGAGAGAGAGAGAGCGTTCATGCAACCCTAGAAA
CCCTAGCTCCACATTNNNGCCTCACATATATATTTGACAACACTCGGAAA
CCTCCAGTTCGAGAGAGGGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCA
ACAAAATAGAGAGAGAGGAACCCTAATAATGGTGTCGGGATCGGGAATCT
GCGCGAAGCGAGTGGTGGTGGACGCACGCCACCACATGCTGGGGCGGCTG
GCGTCGATCGTGGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGT
CCGCTGCGAAGAGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAAATGA
AGTACATGCGGTTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCACGGT
CCCATCCACTTCCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGG
GATGATACCGCATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGAT
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