DN134772

Overview
NameDN134772
Unique NameDN134772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN134772 vs. ExPASy Swiss-Prot
Match: RL13_NATPD (50S ribosomal protein L13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.350e-11
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 2 
Query:  212 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAA 487
            VV+DAR  +LGR+AS VA+  L+G+++  V  E+  ++G     +   M   RKR       GP + + P +IF R+VRGM+P+KT RG  A
Sbjct:   10 VVIDARDCILGRVASQVAERALDGERIAVVNAEQAVITGS----EDDIMEVYRKRDEVGSDRGPRYPKRPDRIFKRSVRGMLPYKTTRGREA 97
The following BLAST results are available for this feature:
BLAST of DN134772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL13_NATPD5.350e-1140.2250S ribosomal protein L13P OS=Natronomonas pharaon... [more]

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Properties
Property NameValue
Genbank descriptionwca01b03 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01b03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134772 ID=DN134772; Name=DN134772; organism=Citrus sinensis; type=EST; length=497bp
TACGGCCGGGGGAGAGAGAGAGAGAGAGAGCGTTCATGCAACCCTAGAAA
CCCTAGCTCCACATTNNNGCCTCACATATATATTTGACAACACTCGGAAA
CCTCCAGTTCGAGAGAGGGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCA
ACAAAATAGAGAGAGAGGAACCCTAATAATGGTGTCGGGATCGGGAATCT
GCGCGAAGCGAGTGGTGGTGGACGCACGCCACCACATGCTGGGGCGGCTG
GCGTCGATCGTGGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGT
CCGCTGCGAAGAGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAAATGA
AGTACATGCGGTTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCACGGT
CCCATCCACTTCCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGG
GATGATACCGCATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGAT
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