DC900355
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.321e-20 Identity = 47/117 (40.17%), Postives = 73/117 (62.39%), Query Frame = 2 Query: 59 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLR 409 + Q+I+R+ NTN+DG ++I FALT I+GIG R+A +CK+ +D+ KRAGE+ E+ + + +P IP+ ++N Q+D DG S ++ LD LR +ER KK + R R Sbjct: 9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYR 125
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_STAMF (30S ribosomal protein S13P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps13p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.253e-20 Identity = 43/119 (36.13%), Postives = 75/119 (63.03%), Query Frame = 2 Query: 59 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHS 415 ++++I+R+ T++DG K ++ L IKG+G LA +C++ +D R G L+ E+ + +++NP + IP W LNR+KDY GK ++ L ++ D+ER KKI++ RG+RH+ Sbjct: 6 NYRYIVRIAGTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDEEIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGKDMHLIGAELIFYVKQDIEREKKIKSWRGIRHA 124
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.942e-20 Identity = 43/120 (35.83%), Postives = 82/120 (68.33%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 N+DFQ+I+R+ N +++G++ I AL+ +KGIG RL + ++ ++ K+ GEL E++ L V N +++ +PDW LN +++ GK +V+ LD+++++D+ +KKIR+++G+RH Sbjct: 25 NKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEKLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRH 143
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_THEAC (30S ribosomal protein S13P OS=Thermoplasma acidophilum GN=rps13p PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.942e-20 Identity = 41/120 (34.17%), Postives = 84/120 (70.00%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 N+DFQ+I+R+ N +++G++ + AL+ +KGIG RL ++ ++ D+ ++K+ GEL +L+ L V +++ +P+W LN +++ GK +VS L++++++D+ +KKIR+++G+RH Sbjct: 25 NKDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLREYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRH 143
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_SULSO (30S ribosomal protein S13P OS=Sulfolobus solfataricus GN=rps13p PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.118e-19 Identity = 46/121 (38.02%), Postives = 76/121 (62.81%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHS 415 ++ F++++R+ +VDG K+ +AL +KGIG A + +K +D N R GELS AE+ + V+++ +P W NR+KDY+ G +V++ L +R+D+ER KK R+ RG+RHS Sbjct: 2 SQQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHS 122
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_UNCMA (30S ribosomal protein S13P OS=Uncultured methanogenic archaeon RC-I GN=rps13p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.460e-19 Identity = 44/119 (36.97%), Postives = 77/119 (64.71%), Query Frame = 2 Query: 56 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 ++ ++I+R+ NT++DG Q + FALT IKGIG R++ I+ ++A VD + G L ++D L V+ N + +P W LNR++D G+ + L M +++D+ +KKIR+++G+RH Sbjct: 67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKLRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRH 184
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.490e-19 Identity = 45/120 (37.50%), Postives = 74/120 (61.67%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 +ED Q+ +R+ T++DG + + ALT + GIGRR+A I+ +KA+VD G L ++D+++ V ++P+W N QKD+ G+ + + N L M R D+ R+KKI +RG+RH Sbjct: 12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKIDAYRGVRH 130
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METTP (30S ribosomal protein S13P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps13p PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.490e-19 Identity = 47/118 (39.83%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 59 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 + +HI+R+ NT++DGK+++ ALT IKG+GRRLA + KA VD G+L +++ L V+ + R IP W +NR+KD G V+ + LR+DL+ +KK R+++G+RH Sbjct: 11 ELRHIVRIYNTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEALKNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKKTRSYKGIRH 127
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_SULAC (30S ribosomal protein S13P OS=Sulfolobus acidocaldarius GN=rps13p PE=3 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 5.548e-19 Identity = 45/123 (36.59%), Postives = 79/123 (64.23%), Query Frame = 2 Query: 47 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHS 415 ++ + F++I+R+ +VDG K+ +AL IKGIG A I+ +K ++D +KR GE+S ++ + ++ N + P+W NRQKDY+ G +V++ L +R+D+ER ++ R+ RG+RHS Sbjct: 1 MSQQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDIERERRSRSWRGVRHS 123
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METAC (30S ribosomal protein S13P OS=Methanosarcina acetivorans GN=rps13p PE=3 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 5.548e-19 Identity = 43/120 (35.83%), Postives = 71/120 (59.17%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 NE+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD + G L E+ L + +P W LNRQKD G+ ++ + + R+D+ LKK+R +RGLRH Sbjct: 17 NEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRH 135 The following BLAST results are available for this feature:
BLAST of DC900355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900355 ID=DC900355; Name=DC900355; organism=Citrus sinensis; type=EST; length=455bpback to top |