DC900355
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 5.121e-65 Identity = 121/125 (96.80%), Postives = 124/125 (99.20%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412
MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 125
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 1.688e-51 Identity = 94/125 (75.20%), Postives = 113/125 (90.40%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412
MSLV E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGELS E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR HRGLRH
Sbjct: 1 MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRH 125 HSP 2 Score: 23.0978 bits (48), Expect = 1.688e-51 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447
WGLRVRG HT+T
Sbjct: 127 WGLRVRGQHTKT 138
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 8.283e-51 Identity = 92/125 (73.60%), Postives = 113/125 (90.40%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412
M+L+ E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGELS E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR HRGLRH
Sbjct: 1 MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRH 125 HSP 2 Score: 23.0978 bits (48), Expect = 8.283e-51 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447
WGLRVRG HT+T
Sbjct: 127 WGLRVRGQHTKT 138
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 2.164e-48 Identity = 88/125 (70.40%), Postives = 110/125 (88.00%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGEL+ E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRH 125 HSP 2 Score: 23.0978 bits (48), Expect = 2.164e-48 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447
WGLRVRG HT+T
Sbjct: 127 WGLRVRGQHTKT 138
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 8.140e-48 Identity = 87/125 (69.60%), Postives = 110/125 (88.00%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGEL+ E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRH 125 HSP 2 Score: 23.0978 bits (48), Expect = 8.140e-48 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447
WGLRVRG HT+T
Sbjct: 127 WGLRVRGQHTKT 138
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3) HSP 1 Score: 188.348 bits (477), Expect = 1.061e-47 Identity = 87/125 (69.60%), Postives = 109/125 (87.20%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+ E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRH 125 HSP 2 Score: 23.0978 bits (48), Expect = 1.061e-47 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447
WGLRVRG HT+T
Sbjct: 127 WGLRVRGQHTKT 138
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3) HSP 1 Score: 188.348 bits (477), Expect = 1.061e-47 Identity = 87/125 (69.60%), Postives = 109/125 (87.20%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+ E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRH 125 HSP 2 Score: 23.0978 bits (48), Expect = 1.061e-47 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447
WGLRVRG HT+T
Sbjct: 127 WGLRVRGQHTKT 138
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3) HSP 1 Score: 188.348 bits (477), Expect = 1.061e-47 Identity = 87/125 (69.60%), Postives = 109/125 (87.20%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+ E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRH 125 HSP 2 Score: 23.0978 bits (48), Expect = 1.061e-47 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447
WGLRVRG HT+T
Sbjct: 127 WGLRVRGQHTKT 138
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3) HSP 1 Score: 188.348 bits (477), Expect = 1.061e-47 Identity = 87/125 (69.60%), Postives = 109/125 (87.20%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+ E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRH 125 HSP 2 Score: 23.0978 bits (48), Expect = 1.061e-47 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447
WGLRVRG HT+T
Sbjct: 127 WGLRVRGQHTKT 138
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 1.061e-47 Identity = 87/125 (69.60%), Postives = 109/125 (87.20%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+ E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRH 125 HSP 2 Score: 23.0978 bits (48), Expect = 1.061e-47 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447
WGLRVRG HT+T
Sbjct: 127 WGLRVRGQHTKT 138 The following BLAST results are available for this feature:
BLAST of DC900355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60 ZOOMx 1POSITION0
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900355 ID=DC900355; Name=DC900355; organism=Citrus sinensis; type=EST; length=455bpback to top |