DC900355
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_CANFA (40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3) HSP 1 Score: 188.348 bits (477), Expect = 1.061e-47 Identity = 87/125 (69.60%), Postives = 109/125 (87.20%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+ E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRH 125 HSP 2 Score: 23.0978 bits (48), Expect = 1.061e-47 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447 WGLRVRG HT+T Sbjct: 127 WGLRVRGQHTKT 138
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_BOVIN (40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3) HSP 1 Score: 188.348 bits (477), Expect = 1.061e-47 Identity = 87/125 (69.60%), Postives = 109/125 (87.20%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+ E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRH 125 HSP 2 Score: 23.0978 bits (48), Expect = 1.061e-47 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447 WGLRVRG HT+T Sbjct: 127 WGLRVRGQHTKT 138
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 1.802e-47 Identity = 87/124 (70.16%), Postives = 107/124 (86.29%), Query Frame = 2 Query: 41 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 SLV +DFQHILR+LNTNVDGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ K AGE SA EL+ +M +VANPR +KIPDWFLNRQKD+K G++SQ+ S+ LD +RDDLERLKKIR HRGLRH Sbjct: 3 SLVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRGHRGLRH 126 HSP 2 Score: 23.0978 bits (48), Expect = 1.802e-47 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447 WGLRVRG HT+T Sbjct: 128 WGLRVRGQHTKT 139
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_SCHPO (40S ribosomal protein S18 OS=Schizosaccharomyces pombe GN=rps18a PE=1 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 3.687e-47 Identity = 86/126 (68.25%), Postives = 107/126 (84.92%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHS 415 MSLV ++FQHILR+LNTNVDGK K+MFA+T IKG+GRR ANIVCKKAD+DM+KRAGEL+ EL+ ++ ++ NP QFKIP WFLNRQKD DGK Q+++N +D KLR+DLERLKKI+ HRGLRH+ Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHA 126
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 8.835e-47 Identity = 83/125 (66.40%), Postives = 109/125 (87.20%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 MSLV + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE + E++ ++ +++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HRG+RH Sbjct: 1 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 125 HSP 2 Score: 23.0978 bits (48), Expect = 8.835e-47 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447 WGLRVRG HT+T Sbjct: 127 WGLRVRGQHTKT 138
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_DROME (40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 1.040e-44 Identity = 82/125 (65.60%), Postives = 105/125 (84.00%), Query Frame = 2 Query: 38 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 MSLV E FQHILR++NTN+DGK+K+ A+T+IKG+GRR +NIV KKADVD+ KRAGE + E+D ++ +++NP Q+K+P+WFLNRQKD DGKY Q+ S+ LD KLRDDLERLKKIR+HRGLRH Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRH 125 HSP 2 Score: 23.0978 bits (48), Expect = 1.040e-44 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447 WGLRVRG HT+T Sbjct: 127 WGLRVRGQHTKT 138
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_DICDI (40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 8.500e-44 Identity = 79/124 (63.71%), Postives = 102/124 (82.26%), Query Frame = 2 Query: 41 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 SLV +FQHI+R+ NTNVDG++KI +ALT +KG+GRR AN+VCKKAD+D +KRAGELS E++ L ++ +PRQ+ IP WFLNRQKD KDGKYS ++N +D+K R+DLERLKKIR HRG+RH Sbjct: 4 SLVFQGEFQHIIRIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKDEVERLTTIMNHPRQYNIPTWFLNRQKDIKDGKYSHCLANQIDVKFREDLERLKKIRAHRGVRH 127
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_YEAST (40S ribosomal protein S18 OS=Saccharomyces cerevisiae GN=RPS18A PE=1 SV=4) HSP 1 Score: 166.007 bits (419), Expect = 4.978e-41 Identity = 80/127 (62.99%), Postives = 101/127 (79.53%), Query Frame = 2 Query: 38 MSLVANED--FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 MSLV E FQHILR+LNTNVDG KI++ALT+IKG+GRR +N+VCKKADVD++KRAGEL+ EL+ ++ ++ NP +KIP WFLNRQ D DGK ++N ++ KLRDDLERLKKIR HRG+RH Sbjct: 1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRH 127 HSP 2 Score: 23.0978 bits (48), Expect = 4.978e-41 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 415 WGLRVRG-HTQT 447 WGLRVRG HT+T Sbjct: 129 WGLRVRGQHTKT 140
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS18_ENTHI (40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.006e-36 Identity = 67/124 (54.03%), Postives = 99/124 (79.84%), Query Frame = 2 Query: 41 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 ++ + +FQH+LRV NTN+DG++K+ +ALT IKG GRR A +VCK+A +D+NKRAG ++ AE++ ++ ++ +KIP WFLNRQKD KDGK SQ+++NA++ +LR+D+E LKK+R HRGLRH Sbjct: 3 TVTSESEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKMRAHRGLRH 126
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METST (30S ribosomal protein S13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps13p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 5.181e-25 Identity = 49/122 (40.16%), Postives = 81/122 (66.39%), Query Frame = 2 Query: 47 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 +A ++F+H++R+ +VDG I ALT I+GIG+ A +CK D+D + + G + + + V+ NP++F IP+WFLNR+ DY+ G+ ++ + L+M LRDDL R+K IR+++G RH Sbjct: 1 MAEQEFRHMVRITRKDVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDESVKQIEAVLENPQEFGIPEWFLNRRNDYETGETKHLIESDLNMTLRDDLNRMKMIRSYKGKRH 122 The following BLAST results are available for this feature:
BLAST of DC900355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900355 ID=DC900355; Name=DC900355; organism=Citrus sinensis; type=EST; length=455bpback to top |