DC900355
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METTH (30S ribosomal protein S13P OS=Methanobacterium thermoautotrophicum GN=rps13p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 9.771e-24 Identity = 46/119 (38.66%), Postives = 80/119 (67.23%), Query Frame = 2 Query: 56 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 E+F+H++R+ ++DG + + ALTSIKG+G+ L+ + A D+N+R G LS E++ L + NP ++ IP W +NR+ DY+ G+ ++ + L+M LR+DL R++K R+++G RH Sbjct: 3 EEFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIERLEEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRKTRSYKGRRH 121
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METS3 (30S ribosomal protein S13P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps13p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 9.771e-24 Identity = 47/119 (39.50%), Postives = 81/119 (68.07%), Query Frame = 2 Query: 56 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 +DF+H++R+ +VDG + I ALT IKG+G L+ +C+ D+D + G ++ ++ + ++ NP++F IP+W LNR++DY+ G+ ++ + LDM LRDDL R+KK R+++G RH Sbjct: 3 DDFKHLVRISRKDVDGNKTIEQALTEIKGVGISLSTTMCRTLDLDSEAQIGYIADEDVLKIEEILENPQKFNIPNWMLNRREDYETGENIHLIESDLDMTLRDDLNRMKKTRSYKGRRH 121
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_PYRHO (30S ribosomal protein S13P OS=Pyrococcus horikoshii GN=rps13p PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 3.143e-22 Identity = 47/118 (39.83%), Postives = 80/118 (67.80%), Query Frame = 2 Query: 59 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 DF+HI+RV ++DG +++ +ALT+IKG+G A +VC+ A +D +AG L+ ++ + ++ +P IP W +NR KDY+ GK +++ LDM +R+D+ RL++IR +RG+RH Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRIRAYRGIRH 120
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METKA (30S ribosomal protein S13P OS=Methanopyrus kandleri GN=rps13p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 5.361e-22 Identity = 48/124 (38.71%), Postives = 83/124 (66.94%), Query Frame = 2 Query: 47 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL--MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 +A+++ + I+R+ + ++DG +K+ +ALT IKGIG R+A +C++ +D K+ GELS E++ + + + + IP W NRQKDY+ G+ +V L+M ++ D++RLKKIR +RG+RH Sbjct: 1 MADDEVKPIVRIADVDLDGHKKVPYALTGIKGIGIRMAYAICRELGLDEEKKLGELSDEEIERIEEEIKKLSEGESNIPSWMYNRQKDYETGEDMHLVGAELEMTVKQDIDRLKKIRAYRGIRH 124
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_PYRFU (30S ribosomal protein S13P OS=Pyrococcus furiosus GN=rps13p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 7.002e-22 Identity = 47/118 (39.83%), Postives = 81/118 (68.64%), Query Frame = 2 Query: 59 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 +F+HI+RV ++DG +++ +ALT+IKGIG A +VC+ A +D +AG L+ ++ + ++A+P IP W +NR KDY+ G+ +++ LDM +R+D+ RL++IR +RG+RH Sbjct: 3 NFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRH 120
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METJA (30S ribosomal protein S13P OS=Methanocaldococcus jannaschii GN=rps13p PE=3 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 7.002e-22 Identity = 47/120 (39.17%), Postives = 79/120 (65.83%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 N +F++++RV T++DG +K++ AL I G+G +A + + A +D NK AG L+ E+ + V+A+P +F IP W NR+KDY G+ V+ + L + ++D+ RLK+IR +RG+RH Sbjct: 3 NSEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRH 122
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_PYRAB (30S ribosomal protein S13P OS=Pyrococcus abyssi GN=rps13p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 9.145e-22 Identity = 46/118 (38.98%), Postives = 80/118 (67.80%), Query Frame = 2 Query: 59 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 DF+HI+RV ++DG +++ +ALT+IKG+G A +VC+ A +D +AG L+ ++ + ++ +P IP W +NR KDY+ G+ +++ LDM +R+D+ RL++IR +RG+RH Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRH 120
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_HYPBU (30S ribosomal protein S13P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps13p PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.194e-21 Identity = 48/124 (38.71%), Postives = 80/124 (64.52%), Query Frame = 2 Query: 44 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHS 415 +++ + +++I+R+L T++ G K+ + L +KGIG LA +C+ +D NKR G L+ AE++ + +ANP IP W LNR+KDY+ GK +V L ++ D+ER K+IR+ RG+RH+ Sbjct: 1 MLSEQQYRYIVRILGTDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDAEIEKIEKAMANPLAIGIPVWMLNRRKDYETGKDLHLVGADLIYYVKRDIEREKRIRSWRGIRHA 124
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_PICTO (30S ribosomal protein S13P OS=Picrophilus torridus GN=rps13p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 3.475e-21 Identity = 45/120 (37.50%), Postives = 78/120 (65.00%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 NE+FQ+I+R+ N +++G++ + AL +KGIG RL+ + KK D+D ++R GEL +++ L + IP W N ++D GK +VSN LD+++ DD+ +KK+R+++G+RH Sbjct: 8 NENFQYIVRIANKDLNGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIGELGEDKIEELRKYIEGKVYDGIPYWMYNHRRDITTGKDFNLVSNDLDLQINDDINLMKKMRSYKGIRH 127
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_PYRKO (30S ribosomal protein S13P OS=Pyrococcus kodakaraensis GN=rps13p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.011e-20 Identity = 47/119 (39.50%), Postives = 78/119 (65.55%), Query Frame = 2 Query: 56 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 E+F+HI+RV ++DG +++ +ALT IKGIG A +V + A +D +AG L+ ++ + ++A+P IP W +NR KDY+ GK +++ L M R+D+ RL++IR +RG+RH Sbjct: 3 ENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVKKIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRIRAYRGIRH 121 The following BLAST results are available for this feature:
BLAST of DC900355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900355 ID=DC900355; Name=DC900355; organism=Citrus sinensis; type=EST; length=455bpback to top |