DC900355
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_SULTO (30S ribosomal protein S13P OS=Sulfolobus tokodaii GN=rps13p PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 7.246e-19 Identity = 43/120 (35.83%), Postives = 76/120 (63.33%), Query Frame = 2 Query: 56 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHS 415 + F++I+R+ +VDG K+ +AL +KGIG A + K +D ++R GELS ++ + + + + ++P+W NR+KDY+ G +V++ L +R+D+ER KKI++ RG+RHS Sbjct: 5 QQFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHS 124
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METMA (30S ribosomal protein S13P OS=Methanosarcina mazei GN=rps13p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.236e-18 Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+ L + + +P W LNRQKD G+ ++ + + R+D+ LKK+R +RGLRH Sbjct: 17 NEELRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDAAIGKFEEI-VPSWMLNRQKDLTTGQDKHLLGTDILLTFREDINNLKKVRAYRGLRH 135
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METBF (30S ribosomal protein S13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps13p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.614e-18 Identity = 45/120 (37.50%), Postives = 71/120 (59.17%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+ L + N +P W LNRQKD G+ ++ + + R+D+ LKK+R +RGLRH Sbjct: 17 NEEIRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDRAIGNFEGI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRH 135
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METHJ (30S ribosomal protein S13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps13p PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.044e-17 Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 2 Query: 53 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 +++ + +RV NT++DG + ++ +LT IKG+GR A + + A V+ N G+L A +D + VV+N +IP W NR KD G ++ + M + DD+ LKKIR +RG+RH Sbjct: 5 DQEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKIRAYRGIRH 123
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METBU (30S ribosomal protein S13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps13p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.976e-17 Identity = 42/122 (34.43%), Postives = 75/122 (61.48%), Query Frame = 2 Query: 47 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 +A+E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++ +D N G LS ++ L + + + ++P W LNRQ D G+ ++ + + L++DL LKK R +RGLRH Sbjct: 1 MADEEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDEDIKKLDSTI-DKFEEQLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKKSRAYRGLRH 121
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.193e-17 Identity = 44/118 (37.29%), Postives = 71/118 (60.17%), Query Frame = 2 Query: 62 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHS 415 F+HI+R+ +T++DG + +MFALT IKGIG R A + + VD + GEL ++ + V + +P W LNR+KD G+ ++S +D D+ERL K++ +RG+RH+ Sbjct: 3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHA 119
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.157e-16 Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = 2 Query: 56 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 ED ++ +R+ T++DG + + ALT + GIG R A I+ +KADVD G+L ++ ++ V N +P+W N QKDY G+ + N L + R D+ R+K I ++RG+RH Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRH 135
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_METMP (30S ribosomal protein S13P OS=Methanococcus maripaludis GN=rps13p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.511e-16 Identity = 38/118 (32.20%), Postives = 72/118 (61.02%), Query Frame = 2 Query: 59 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 +F+H +R+ T+++GK + +AL +KGIGR +A V + ++D ++AG L+ ++ + V+ +P IP W NR+KD G ++ L + +++D+ +KKIR ++G+RH Sbjct: 5 EFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRH 122
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_AERPE (30S ribosomal protein S13P OS=Aeropyrum pernix GN=rps13p PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 3.366e-16 Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2 Query: 44 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 + F++I+R+ ++DG K+ + L SIKGIG A V + +D K+ G L+ E+ L V+ + Q +P W NR+KDY+ GK ++ + L R D+ER KI + RG+RH Sbjct: 1 MAGETSFKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKIGSWRGIRH 123
BLAST of DC900355 vs. ExPASy Swiss-Prot
Match: RS13_THEPD (30S ribosomal protein S13P OS=Thermofilum pendens (strain Hrk 5) GN=rps13p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.182e-15 Identity = 40/118 (33.90%), Postives = 72/118 (61.02%), Query Frame = 2 Query: 59 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRH 412 +F++I+RV ++ G + +++AL IKGIG A V KK +D + G LS E++ L + + +P W LNR+KD G ++++ L + +R+D+E +KKI++++G+RH Sbjct: 4 EFRYIVRVAGVDLPGDKALVYALADIKGIGVSTAQAVAKKLGLDPYRLLGTLSEEEVEKLSAALREIEKLGLPPWMLNRRKDPFLGVDRHLITSDLLITVRNDIEFMKKIKSYKGVRH 121 The following BLAST results are available for this feature:
BLAST of DC900355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900355 ID=DC900355; Name=DC900355; organism=Citrus sinensis; type=EST; length=455bpback to top |