DC900316

Overview
NameDC900316
Unique NameDC900316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: SMUF1_HUMAN (E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens GN=SMURF1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.113e-22
Identity = 49/97 (50.52%), Postives = 70/97 (72.16%), Query Frame = -1
Query:  324 AASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGS---QKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHE 605
            A S +++WFW+ V+ F +E +ARLLQFVTG+++VPL+GF ALQG +G+   + F IH    + D+LP AHTCFN++D P Y S + L E+LL A+ E
Sbjct:  654 ADSNIVRWFWQAVETFDEERRARLLQFVTGSTRVPLQGFKALQGSTGAAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLTAVEE 750          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: NEDD4_HUMAN (E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens GN=NEDD4 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 8.722e-22
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  309 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 617
            +GYSA   VIQWFW+ V     E + RLLQFVTGTS+VP+ GF+ L G +G Q F + + +G+ + LP AHTCFN+LD P Y S + L ++L +AI E  +GF
Sbjct: 1215 NGYSANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQSFTVEQ-WGTPEKLPRAHTCFNRLDLPPYESFEELWDKLQMAI-ENTQGF 1315          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.943e-21
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            Y+ +S  IQWFW+VV+    E + RLLQFVTGT ++P+ GF+ L G +G QKF I +  G    LP +HTCFN+LD P Y S + L+E+LL AI E  EGFG
Sbjct:  769 YTKSSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFAELIGSNGPQKFCIDRV-GKETWLPRSHTCFNRLDLPPYKSYEQLKEKLLYAIEE-TEGFG 868          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: NEDD4_DROME (E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila melanogaster GN=Nedd4 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.943e-21
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = -1
Query:  309 VIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 593
            +IQWFW  V  FS E ++RLLQFVTGTS+VP+ GF  L G +G Q F I K +G+ ++ P AHTCFN+LD P Y     L+++L+ AI EG++GF
Sbjct:  911 IIQWFWRAVLSFSNEMRSRLLQFVTGTSRVPMNGFKELYGSNGPQMFTIEK-WGTPNNFPRAHTCFNRLDLPPYEGYLQLKDKLIKAI-EGSQGF 1003          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: WWP2_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.538e-21
Identity = 54/102 (52.94%), Postives = 67/102 (65.69%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            Y+  S  IQWFW+VV+    E + RLLQFVTGT ++P+ GF+ L G +G QKF I K  G    LP +HTCFN+LD P Y S + L E+LL AI E  EGFG
Sbjct:  769 YTKNSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFAELIGSNGPQKFCIDKV-GKETWLPRSHTCFNRLDLPPYKSYEQLREKLLYAIEE-TEGFG 868          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: ITCH_MOUSE (E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.314e-21
Identity = 52/102 (50.98%), Postives = 67/102 (65.69%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            Y+  S  I WFW+ V+    E + RLLQFVTGT ++P+ GF+ L G +G QKF I K  G  + LP +HTCFN+LD P Y S + L+E+LL AI E  EGFG
Sbjct:  763 YTRTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEKV-GKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEE-TEGFG 862          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: ITCH_HUMAN (E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.314e-21
Identity = 52/102 (50.98%), Postives = 67/102 (65.69%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            Y+  S  I WFW+ V+    E + RLLQFVTGT ++P+ GF+ L G +G QKF I K  G  + LP +HTCFN+LD P Y S + L+E+LL AI E  EGFG
Sbjct:  802 YARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEKV-GKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEE-TEGFG 901          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: NEDD4_RAT (E3 ubiquitin-protein ligase NEDD4 OS=Rattus norvegicus GN=Nedd4 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.383e-21
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = -1
Query:  309 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 617
            +GYS    VI WFW+ V     E + RLLQFVTGTS+VP+ GF+ L G +G Q F + + +G+ D LP AHTCFN+LD P Y S   L ++L +AI E  +GF
Sbjct:  783 NGYSLNHQVIHWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQSFTVEQ-WGTPDKLPRAHTCFNRLDLPPYESFDELWDKLQMAI-ENTQGF 883          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: NEDD4_MOUSE (E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus GN=Nedd4 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 7.383e-21
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = -1
Query:  309 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGF 617
            +GYS    VI WFW+ V     E + RLLQFVTGTS+VP+ GF+ L G +G Q F + + +G+ D LP AHTCFN+LD P Y S   L ++L +AI E  +GF
Sbjct:  783 NGYSMNHQVIHWFWKAVWMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQSFTVEQ-WGTPDKLPRAHTCFNRLDLPPYESFDELWDKLQMAI-ENTQGF 883          
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: WWP1_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus musculus GN=Wwp1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.148e-20
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611
            Y+  S  I WFW+ V+    E + RLLQFVTGT ++PL GF+ L G +G QKF I K  G    LP +HTCFN+LD P Y S + L+E+LL AI E  EGFG
Sbjct:  817 YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKV-GKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEE-TEGFG 916          
The following BLAST results are available for this feature:
BLAST of DC900316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
SMUF1_HUMAN5.113e-2250.52E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens... [more]
NEDD4_HUMAN8.722e-2250.49E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens ... [more]
WWP2_MOUSE1.943e-2151.96NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus... [more]
NEDD4_DROME1.943e-2152.63E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila m... [more]
WWP2_HUMAN2.538e-2152.94NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Hom... [more]
ITCH_MOUSE3.314e-2150.98E3 ubiquitin-protein ligase Itchy OS=Mus musculus ... [more]
ITCH_HUMAN3.314e-2150.98E3 ubiquitin-protein ligase Itchy homolog OS=Homo ... [more]
NEDD4_RAT7.383e-2149.51E3 ubiquitin-protein ligase NEDD4 OS=Rattus norveg... [more]
NEDD4_MOUSE7.383e-2149.51E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus ... [more]
WWP1_MOUSE2.148e-2051.96NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionDC900316 VSS Citrus sinensis cDNA clone VS28665 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900316 ID=DC900316; Name=DC900316; organism=Citrus sinensis; type=EST; length=632bp
AAGAAACAATTGATTTGATTATCCAGAAATTTTATTTTTCTTGGACAAGG
ATGGCATAAATCACCAAATGTTGAAATCAAAAAGGGAAAAAGAATTTGCA
AAAATAAAGGGCAGATTGGCAAATTTTAAAACTGCCATGATAATTTTCAA
TAGCCAATATATGCTGTACAGTATATAAACATGTTTTGACTTGAAATGTG
ACATCCACCCTTTTACCCATTTCCTCTCCCATTGCAGCTTTTGAGATAAT
ATATATATTTTTATCTACACTACTCTGGAGAAATAGCCAATTTTACTTAA
CCAAATCCAAACCCTTCATTGCCTTCATGAATTGCAAGCAGCAGTCTCTC
CTCTAGATGCTGCTTAGAAGGATATTCCGGCCAATCTAATTGATTGAAAC
AAGTATGAGCAGAAGGCAAATGATCTATGCTGCCATATGCCTTGTGTATT
TGAAACTTCTGTGAACCTGAAATTCCTTGAAGTGCACTGAAACCTTCCAA
GGGCACCTTTGAGGTGCCAGTCACAAACTGCAGAAGACGAGCCTTATCCT
CCTTGCTGAACCCTTGAACAACCTCCCAAAACCACTGGATAACAGGAGAT
GCAGCACTATATCCAGATATTCCGGATTTGCC
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