DC900316
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2) HSP 1 Score: 173.326 bits (438), Expect = 8.963e-43 Identity = 81/105 (77.14%), Postives = 90/105 (85.71%), Query Frame = -1 Query: 303 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFGF 617 + Y+ SPVI+WFWEVV+ FSKED AR LQFVTGTSKVPLEGF ALQGISG Q+ QIHKAYGS + LPSAHTCFNQLD PEY SK+ ++ERLLLAIHE NEGFGF Sbjct: 3553 TSYTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQSKEQVQERLLLAIHEANEGFGF 3657
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3) HSP 1 Score: 172.555 bits (436), Expect = 1.529e-42 Identity = 81/105 (77.14%), Postives = 90/105 (85.71%), Query Frame = -1 Query: 303 SGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFGF 617 + Y+A SPVI WFWEVV+ FSKED AR LQFVTGTSKVPLEGF ALQGISG Q+ QIHKAYG+ + LPSAHTCFNQLD PEY SK+ L+ERLLLAIHE +EGFGF Sbjct: 3576 TSYTAGSPVIHWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGAPERLPSAHTCFNQLDLPEYQSKEQLQERLLLAIHEASEGFGF 3680
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: PTR1_SCHPO (E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharomyces pombe GN=ptr1 PE=1 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.532e-34 Identity = 63/104 (60.58%), Postives = 82/104 (78.85%), Query Frame = -1 Query: 303 GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFGF 614 GY+ +SP +QWFW V+ F +E++A+LLQF TGTSKVPL GF L+G+SG Q+F IHK+YGS++ LP +HTCFNQLD PEY + + L LL AI+EG+EGFGF Sbjct: 3123 GYNVSSPQVQWFWRAVRSFDEEERAKLLQFATGTSKVPLNGFKELEGMSGFQRFNIHKSYGSLNRLPQSHTCFNQLDLPEYDTYEQLRSMLLTAINEGSEGFGF 3226
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: TOM1_NEUCR (E3 ubiquitin-protein ligase TOM1-like OS=Neurospora crassa GN=B11B22.010 PE=3 SV=3) HSP 1 Score: 134.42 bits (337), Expect = 4.614e-31 Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = -1 Query: 303 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFGF 611 YSA +P IQWFW V+ F KE+ A+LLQFVTGTSKVPL GF L+G++G +F IH+ YGS D LPS+HTCFNQLD PEY + + L +LL AI G++ FGF Sbjct: 3923 YSAGAPQIQWFWRAVRSFDKEELAKLLQFVTGTSKVPLNGFKELEGMNGVSRFNIHRDYGSKDRLPSSHTCFNQLDLPEYENYETLRSQLLKAITAGSDYFGF 4025
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: TOM1_ASHGO (Probable E3 ubiquitin-protein ligase TOM1 OS=Ashbya gossypii GN=TOM1 PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.342e-30 Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = -1 Query: 306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611 Y+ I +FW V+ F KE++A+LLQFVTGTSKVPL GF L G++G KF IH+ YGSID LPS+HTCFNQLD P Y S + L LLLAI+EG+EGFG Sbjct: 3155 YTPTCKQINYFWRAVRSFDKEERAKLLQFVTGTSKVPLNGFKELSGVNGISKFSIHRDYGSIDRLPSSHTCFNQLDLPAYDSYETLRGSLLLAINEGHEGFG 3256
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HUWE1_RAT (E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 8.702e-30 Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = -1 Query: 306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611 Y + S IQWFW ++ F + D+A+ LQFVTGTSKVPL+GF+AL+G++G QKFQIH+ S D LPSAHTCFNQLD P Y S + L LLLAI E +EGFG Sbjct: 219 YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 320
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HUWE1_MOUSE (E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=4) HSP 1 Score: 130.183 bits (326), Expect = 8.702e-30 Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = -1 Query: 306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611 Y + S IQWFW ++ F + D+A+ LQFVTGTSKVPL+GF+AL+G++G QKFQIH+ S D LPSAHTCFNQLD P Y S + L LLLAI E +EGFG Sbjct: 4274 YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 4375
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: HUWE1_HUMAN (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3) HSP 1 Score: 130.183 bits (326), Expect = 8.702e-30 Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = -1 Query: 306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611 Y + S IQWFW ++ F + D+A+ LQFVTGTSKVPL+GF+AL+G++G QKFQIH+ S D LPSAHTCFNQLD P Y S + L LLLAI E +EGFG Sbjct: 4271 YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 4372
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: TOM1_YEAST (E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae GN=TOM1 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 8.144e-28 Identity = 57/102 (55.88%), Postives = 74/102 (72.55%), Query Frame = -1 Query: 306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611 Y+A + +FW V+ F E++A+LLQFVTGTSKVPL GF L G++G KF IH+ +GS + LPS+HTCFNQL+ P Y S + L LLLAI+EG+EGFG Sbjct: 3165 YTATCKEVSYFWRAVRSFDAEERAKLLQFVTGTSKVPLNGFKELSGVNGVCKFSIHRDFGSSERLPSSHTCFNQLNLPPYESYETLRGSLLLAINEGHEGFG 3266
BLAST of DC900316 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe GN=pub3 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.814e-27 Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = -1 Query: 306 YSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDWPEYPSKQHLEERLLLAIHEGNEGFG 611 Y A PVI+WFWE++ G+ ED+++LLQF TGTS++P+ GF LQG G +KF I KA G+ D LP AHTCFN+LD P+YPSK L E+L LA+ E GFG Sbjct: 685 YIATDPVIKWFWEIIAGWKNEDRSKLLQFATGTSRIPVNGFRDLQGSDGPRKFTIEKA-GTPDQLPVAHTCFNRLDLPDYPSKDTLHEKLSLAV-ENTVGFG 784 The following BLAST results are available for this feature:
BLAST of DC900316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900316 ID=DC900316; Name=DC900316; organism=Citrus sinensis; type=EST; length=632bpback to top |