CX043655
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 6.488e-53 Identity = 105/139 (75.54%), Postives = 115/139 (82.73%), Query Frame = 2 Query: 32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448 MSS +TKGGRGKPK++KS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP GNAARDNK NRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP+K+GKG+ +IGSASQEF Sbjct: 1 MSSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 3.220e-52 Identity = 105/140 (75.00%), Postives = 114/140 (81.43%), Query Frame = 2 Query: 29 SMSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448 S + +G+TKGGRGKPK+TKS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP GNAARDNKK RIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP K+GK + DIGSASQEF Sbjct: 3 SGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 9.369e-52 Identity = 103/138 (74.64%), Postives = 113/138 (81.88%), Query Frame = 2 Query: 35 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448 + +G+TKGGRGKPK+TKS+SRS KAGLQFPVGRIARFLK+GKYA+RVGAGAP GNAARDNKK RIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP K+GK + DIGSASQEF Sbjct: 5 AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 7.932e-51 Identity = 106/139 (76.26%), Postives = 113/139 (81.29%), Query Frame = 2 Query: 32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448 MSS+G+ KGGRGK KSTKS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP GNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP+K GK + +IGSASQEF Sbjct: 1 MSSSGA-KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 2.821e-48 Identity = 102/139 (73.38%), Postives = 109/139 (78.42%), Query Frame = 2 Query: 32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448 MSSAG GGRGK K +KS+SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP GNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP+K GK + DIGSASQEF Sbjct: 1 MSSAGGG-GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 2.821e-48 Identity = 102/139 (73.38%), Postives = 109/139 (78.42%), Query Frame = 2 Query: 32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448 MSSAG GGRGK K +KS+SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP GNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP+K GK + DIGSASQEF Sbjct: 1 MSSAGGG-GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.003e-45 Identity = 98/137 (71.53%), Postives = 107/137 (78.10%), Query Frame = 2 Query: 38 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448 S+ GGRGK K+TK++SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP GNAARDNKKNRIVPRHIQLAVRNDEELS+LLGTVTIA GGVLPNI Q LLP+K G G+ DIGSASQEF Sbjct: 2 SSSQGGGGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.003e-45 Identity = 98/137 (71.53%), Postives = 107/137 (78.10%), Query Frame = 2 Query: 38 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448 S+ GGRGK K+TK++SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP GNAARDNKKNRIVPRHIQLAVRNDEELS+LLGTVTIA GGVLPNI Q LLP+K G G+ DIGSASQEF Sbjct: 2 SSSQGGGGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.188e-38 Identity = 89/133 (66.92%), Postives = 95/133 (71.43%), Query Frame = 2 Query: 32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG--KGRED 424 M+ G T G G K+T SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP GNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH LLP+K G K +ED Sbjct: 1 MAGRGKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKPQED 130
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.514e-38 Identity = 82/123 (66.67%), Postives = 91/123 (73.98%), Query Frame = 2 Query: 59 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKM--GKGRE 421 G+GK K++SRS KAGLQFPVGRIAR+LK GKYA+R+GAGAP GNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH LLP+K GKG E Sbjct: 5 GKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGEE 127 The following BLAST results are available for this feature:
BLAST of CX043655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043655 ID=CX043655; Name=CX043655; organism=Citrus sinensis; type=EST; length=682bpback to top |