DC900295

Overview
NameDC900295
Unique NameDC900295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 8.244e-78
Identity = 130/223 (58.30%), Postives = 163/223 (73.09%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            W  A ATFYG      T +GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+EI C  +P WC  GS  + +TATNFCP NY+  +D   WCNPP+ HFDL++ MFLKIA+Y+AG+VPV YRR+PC K GG++F   G  YF +VL+ NV GAGDI  V VK ++TGW++M +NWGQNW ++ VL GQ LSFRV  +D  +   WN++P NW FGQTF GK
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGS--VKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNWGFGQTFDGK 276          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.344e-77
Identity = 133/229 (58.08%), Postives = 168/229 (73.36%), Query Frame = 3
Query:    3 YSGGPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKA-SDRRSSTSWNIVPANWQFGQTFVGK 686
            Y+G PW++A ATFYG    S TM GACGYGN+Y  GYGV T ALSTALFN G +CG CF++KC + P  C+ GSP+ +VTATN CPPNY   S+NGGWCNPPR HFDL  P F+KIA ++AGI+PVSYRRV C+K GGIRF   G  Y+ LV V NV G GDI  + VKGSRTGW++MS NWG ++Q+ + L GQSLSFR+ + + R++  ++N  PA+W  G+T+  K
Sbjct:   26 YAGTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTYQSK 253          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 1.190e-76
Identity = 133/222 (59.91%), Postives = 162/222 (72.97%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPA--WCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W  A ATFYGG+D SGTM GACGYGNLY QGYG+  AALSTALFN+G +CG C+ I C  + A  WC     ++ VTATN CPPN+ALPSD GGWCNPPR HFD++ P + +I  YRAGIVPV YRRV C ++GG+RFT+ GF +F LVLV NVAG+G +  V+V+G+ TGW+ MSRNWG NWQS A L GQ LSF V  +  +     ++ PA W+FGQTF
Sbjct:   27 WIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRG-AVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGWKFGQTF 247          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.830e-75
Identity = 125/223 (56.05%), Postives = 159/223 (71.30%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            W  A ATFYG      T +GACGYG+L+ QGYG+ TAALSTALFN G +CGAC++I C N+P WC  GS  + +TATNFCPP+Y+     G WCNPP+ HFDL++PMFLKIA+Y+AG+VPV YRR+ C + GG++F   G  YF ++L  NV GAGDI  + VKG +TGW++M +NWGQNW +   L GQ +SFRV  SD  +    N++P NW FGQTF GK
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGS--VKITATNFCPPDYS--KTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDGK 266          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 8.532e-75
Identity = 132/233 (56.65%), Postives = 168/233 (72.10%), Query Frame = 3
Query:    3 YSGGPWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKA-SDRRSSTSWNIVPANWQFGQTFVG-KNFR 695
            Y  GPW+ AHATFYG      TM GACGYGNL++ GYG++TAALST LFN+G  CG CF+I C+  P  C+SG  S +VTATN CPPN+   S+ GGWCNPPR HFD+A P F+K+A +RAGI+PV+YRRVPC++ GG+RF   G  Y+ L+ V NV GAGDI  + VKGSRT W+SMS NWG ++Q+ + L GQSLSFRV + +   +  +WN+ PANW  G+T+    NFR
Sbjct:   32 YRPGPWRYAHATFYGDETGGETMGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPH-CYSGK-STVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANWSGGKTYKSTANFR 262          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 2.482e-74
Identity = 124/223 (55.61%), Postives = 159/223 (71.30%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            W  A ATFYG      T +GACGYG+L+ QGYG+ TAALSTALFN G +CGAC++I C ++P WC  G+  I +TATNFCPP+Y+     G WCNPP+ HFDL++PMFLKIA+Y+AG+VPV YRR+ C + GG++F   G  YF ++L  NV GAGDI  + VKG +TGW++M +NWGQNW +   L GQ +SFRV  SD  +    N++P NW FGQTF GK
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGT--IKITATNFCPPDYS--KTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDGK 273          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.609e-73
Identity = 130/222 (58.56%), Postives = 158/222 (71.17%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W    ATFYGG+D SGTM GACGYGNLY QGYG+N AALST LFN+G SCG C+ I C  +  P WC  G  +I VT TN+CPPNY LP   GGWCN  RPHFD++ P +  I  Y AGI+P+ Y++V C + GG+RFTINGF YF LVLVTN+AG+G I  ++VKGS TGW+ M+RNWG NWQ  A L GQ+LSF V ++  ++    + VPA W FGQTF
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGK-AITVTGTNYCPPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTF 241          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 2.745e-73
Identity = 131/222 (59.01%), Postives = 158/222 (71.17%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANE--PAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W    ATFYGG+D SGTM GACGYGNLY QGYG+N AALST LFNNG SCG C+ I C  +  P+ C  G+ +I VT TNFCPPNY LP   GGWCN  RPHFD++ P +  I  Y AGIVP+ Y++V C + GG+RFTI G  YF LVLVTN+AG+G I  ++VKGS TGW+ MSRNWG NWQ  A L GQ+LSF V ++  ++    ++VPA W FGQTF
Sbjct:   23 WLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGT-AITVTGTNFCPPNYDLPY--GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQTF 241          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 9.761e-71
Identity = 122/225 (54.22%), Postives = 155/225 (68.89%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 692
            W+ A AT+Y  ++    + GACGYG+L   GYG+ T  LS  LF  G  CGACFE++C ++  WC  G+ SI++TATNFC PNY    D GG CNPP  HF L +  F KIA ++AG +PV YRR+ CRK+G +RFT++G   F  VL+TNVAG+GDI  V +KGSRTGW+ M RNWGQNW  NA L  Q+LSF V +SDR + TS+N+ P NW +GQTF GK F
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGT-SIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQF 263          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.175e-70
Identity = 122/224 (54.46%), Postives = 158/224 (70.54%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQF-GQTFVGK 686
            W    ATFYG  +   T +GACGYG+L+ QGYG+ TAALSTALFNNG  CGAC+EI C + P WC  GS  I +TATNFCPP++  P+DN  WCNPP+ HFDL+ PMFLKIA+Y+AG+VPV +RRVPC K GG++F I G  +F ++L  NV GAG +  + +KG+RT W++M +NWGQ W +  VL GQ LSFR+  SD       ++ P +W+  GQ+F GK
Sbjct:   90 WGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGS--IKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDGK 309          
The following BLAST results are available for this feature:
BLAST of DC900295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EXP26_ARATH8.244e-7858.30Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP18_ARATH5.344e-7758.08Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP27_ORYSJ1.190e-7659.91Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP23_ARATH3.830e-7556.05Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXPA7_ARATH8.532e-7556.65Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP25_ARATH2.482e-7455.61Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP19_ORYSJ1.609e-7358.56Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ORYSJ2.745e-7359.01Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH9.761e-7154.22Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP24_ARATH2.175e-7054.46Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]

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Properties
Property NameValue
Genbank descriptionDC900295 VSS Citrus sinensis cDNA clone VS28642 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900295 ID=DC900295; Name=DC900295; organism=Citrus sinensis; type=EST; length=717bp
ATTACTCCGGTGGCCCATGGCAAAGCGCCCATGCCACCTTTTACGGCGGC
TCTGACGCCTCCGGCACCATGGAAGGAGCGTGCGGTTACGGTAACTTGTA
CAGCCAGGGCTACGGCGTGAATACGGCGGCGCTGAGCACGGCGCTGTTCA
ACAATGGCTTGAGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCAAACGAA
CCCGCGTGGTGTCACTCCGGGAGCCCTTCCATTTTGGTTACCGCTACAAA
CTTTTGCCCGCCCAATTACGCACTCCCAAGTGACAATGGCGGCTGGTGTA
ACCCTCCTCGCCCTCATTTTGACCTCGCCATGCCCATGTTCCTCAAGATT
GCTGAGTACCGCGCCGGCATCGTCCCCGTCTCCTACCGCCGGGTACCATG
CCGCAAGAAGGGAGGAATCAGGTTCACAATAAACGGGTTCCGCTACTTCA
ACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATATCCTGAGGGTG
AACGTGAAAGGGTCAAGAACTGGCTGGATGAGCATGAGCCGTAACTGGGG
CCAAAACTGGCAGTCTAACGCAGTGCTGGTAGGGCAGTCACTTTCGTTTA
GGGTGAAAGCCAGTGACCGACGCAGCTCCACCTCGTGGAACATTGTGCCA
GCTAACTGGCAGTTTGGTCAAACATTCGTTGGAAAGAATTTCAGAGTCTA
AGTTAACGGAGGAGTTT
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