DC900295

Overview
NameDC900295
Unique NameDC900295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1923 contig Csv1_Contig1923:144..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.488e-66
Identity = 122/224 (54.46%), Postives = 158/224 (70.54%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGG--WCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVK-GSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKA-SDRRSSTSWNIVPANWQFGQTF 677
            W  AHATFYG   AS TM GACGYGNLY+ GYG +TAALST LF +G  CG C++++C    A C+ GSP+I VTATN CPPN+A   D GG  WCNPPR HFDL+ P F+++A++RAGIVPV YRRVPC + GG+RF + G  Y+ L  V NVAGAGD+  + VK G   GW+ MS NWG ++Q+ A L GQ+LSF+V + +  ++  +  + PA+W FG T+
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGT-ASCYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTY 259          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 5.543e-66
Identity = 112/225 (49.78%), Postives = 157/225 (69.78%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 692
            W+SA A++Y  +D    + GACG+G+L   GYG+ T  LSTALF  G +CG C+E+KC ++  +C  G+ SI+VTATNFC PN+ LP+D GG CNPP  HF L +  F KIA ++AG++P+ YRRV C + GG+RF + G  +F  VL++NV GAGD+  V +KG+ +GW+SM RNWGQ W  N+   GQ LSF + +SD ++ T++N+VP  W FG+T+ GK F
Sbjct:   33 WRSAKASYYA-ADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGT-SIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEWDFGKTYTGKQF 255          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.751e-65
Identity = 121/222 (54.50%), Postives = 149/222 (67.12%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W    ATFYGG+D SGTM GACGYGNLY Q YG+N AALST LFN+G SCG C+ I C     P WC  G  +I VT TN+           GGWCN  RP+FD++ P +  I  Y AGIVP+ Y++V C + GG+RF INGF YF LVLVTN+AG+G I+ ++VKGS TGW+ M+RNWG NWQ  A L GQ+LSF V ++  ++    + VPA W FGQTF
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGK-AITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTF 232          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 3.972e-64
Identity = 120/224 (53.57%), Postives = 150/224 (66.96%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGT-MEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            W  A A +YG     GT +EGACGYG+L   GYG+ TAALSTALFN+G SCGAC+EI C+  P  C SGS  I +TAT+ CPP  A       WC  P  HFDL++PMF+KIA+ +A +VPV YRRVPC K GG++F + G      +L  NV GAGDI+ V+ KGS+T W+ MSR WGQNW +N  L GQS+S RV  SD  +    +++PA+W FGQTF GK
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGS--IKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDGK 259          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.847e-62
Identity = 109/227 (48.02%), Postives = 149/227 (65.64%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 692
            W+ A AT     D S ++   GACGYG+L    +   +A LS  LFN G SCGAC E++C N   WC  GSPS++VTAT+FCPPN  L SD GGWCN P+ H +L+   F  IAE RA ++P+ YRRV C ++GG+RF+++G  +F  VL++NV   G+++ V VKG  T W+ M+RNWGQNW S+  L+GQSLSF V     ++  S+++ P  W+FG T+ GK F
Sbjct:   28 WKIATATLSRDRDGSSSVATGGACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQGKQF 254          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.718e-62
Identity = 108/206 (52.43%), Postives = 140/206 (67.96%), Query Frame = 3
Query:   75 GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 692
            GACGYG+L    YG  TA +S ALF  G +CG C+E++C N   WC  GSP+++VTAT+FC PN  L  D GGWCN P+ HF+++   FL++A+ +A IVPV +RRV C + GG+RFTI G   F  VL+TNVA  G++  V VKGSRTGW+ M RNWGQNWQ +A L GQ LSF V     R+  ++++ P +W F QTF GK F
Sbjct:   53 GACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEGKQF 258          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.718e-62
Identity = 112/224 (50.00%), Postives = 154/224 (68.75%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEY-RAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSR-TGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W  AHAT+YG +D+  ++ GACGY N Y  G+G +TAALS  LF +G SCG C++++C    +P WC  G+ ++ VTATNFCP N     +N GWCN PR HFD++ P F +IA     GIVPV YRRV C+++GG+RFT+ G   FN+V+++NV G G +  V V+GS+   W+ M+RNWG NWQS+  L GQ LSF+V  +D ++ T  N+VP++W FGQTF
Sbjct:   27 WIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGA-AVTVTATNFCPTN-----NNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTF 244          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.791e-56
Identity = 111/230 (48.26%), Postives = 146/230 (63.48%), Query Frame = 3
Query:    3 YSGGPWQSAHATFYGGSDASGTMEG-ACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGS-RTGWMSMSRNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            Y  GPW   HATFYGG DASGT EG ACGY +  + GYG  TAA+S ALF+NG  CGAC+E+K             +++VTATN  PP       NG        HFDL MP FL IAE + G+VPVSYR+V C ++GGI++TI G   +N+V+V NV GAGD++++ VKG+ R  W  + R+WGQ W++ A L G+SL+FRV   D R +TSW + P +W +  T+  K
Sbjct:   77 YKCGPWVDGHATFYGGRDASGTTEGGACGYKD--ADGYGAMTAAVSPALFDNGAGCGACYELK--------GDSGKTVVVTATNQAPPPV-----NG----MKGEHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTYQAK 287          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.416e-53
Identity = 105/236 (44.49%), Postives = 141/236 (59.75%), Query Frame = 3
Query:    3 YSGGPWQSAHATFYGGSDASGT-MEGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTG--WMSMSRNWGQNWQSNAVL---VGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKN 689
            Y    W    ATFYG     G    GACGY  N     Y   TAALST LF +G  CG C+E++C   P WC+ GSPS+++T TN CPPN+ LP+D+GGWCNPPR HFD+A P FLK+A+  AGIVPV YRRVPC++ GG+RF + G  Y+ L+ V NV GAGD+  ++VK S  G  W+  + NWG  +Q  A L    G ++     ++ +++    + +   W  G  + G N
Sbjct:   47 YKTSDWHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCYQGSN 281          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.927e-26
Identity = 76/238 (31.93%), Postives = 120/238 (50.42%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG---GIRFTINGFRYFNLVLVTNVAGAGDILRVNV-----KGSRTGWMSMSRNWGQNWQSNA--VLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 677
            W    AT+YG ++ SGT  GACGY G++    +    AA S +++ +G  CG+C+++KC+  P+   SG P + V  T+ CP         GG C     HFDL+   F  +A+         AG +PV Y RVPC+ +G     R      +Y+  VLV +  G GD+  V++      G    W +M ++WG  W+ N+    +   +S R+ +   R+  + N++PA WQ G T+
Sbjct:   38 WSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPSC--SGKP-VTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNSGPAPLQAPMSIRLTSGSGRTLVASNVIPAGWQPGGTY 263          
The following BLAST results are available for this feature:
BLAST of DC900295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EXP30_ORYSJ2.488e-6654.46Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP10_ORYSJ5.543e-6649.78Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ2.751e-6554.50Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH3.972e-6453.57Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ARATH2.847e-6248.02Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP16_ORYSJ3.718e-6252.43Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH3.718e-6250.00Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP26_ORYSJ6.791e-5648.26Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ2.416e-5344.49Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ1.927e-2631.93Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionDC900295 VSS Citrus sinensis cDNA clone VS28642 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900295 ID=DC900295; Name=DC900295; organism=Citrus sinensis; type=EST; length=717bp
ATTACTCCGGTGGCCCATGGCAAAGCGCCCATGCCACCTTTTACGGCGGC
TCTGACGCCTCCGGCACCATGGAAGGAGCGTGCGGTTACGGTAACTTGTA
CAGCCAGGGCTACGGCGTGAATACGGCGGCGCTGAGCACGGCGCTGTTCA
ACAATGGCTTGAGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCAAACGAA
CCCGCGTGGTGTCACTCCGGGAGCCCTTCCATTTTGGTTACCGCTACAAA
CTTTTGCCCGCCCAATTACGCACTCCCAAGTGACAATGGCGGCTGGTGTA
ACCCTCCTCGCCCTCATTTTGACCTCGCCATGCCCATGTTCCTCAAGATT
GCTGAGTACCGCGCCGGCATCGTCCCCGTCTCCTACCGCCGGGTACCATG
CCGCAAGAAGGGAGGAATCAGGTTCACAATAAACGGGTTCCGCTACTTCA
ACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATATCCTGAGGGTG
AACGTGAAAGGGTCAAGAACTGGCTGGATGAGCATGAGCCGTAACTGGGG
CCAAAACTGGCAGTCTAACGCAGTGCTGGTAGGGCAGTCACTTTCGTTTA
GGGTGAAAGCCAGTGACCGACGCAGCTCCACCTCGTGGAACATTGTGCCA
GCTAACTGGCAGTTTGGTCAAACATTCGTTGGAAAGAATTTCAGAGTCTA
AGTTAACGGAGGAGTTT
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