DC900295

Overview
NameDC900295
Unique NameDC900295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1923 contig Csv1_Contig1923:144..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19
Identity = 67/230 (29.13%), Postives = 108/230 (46.96%), Query Frame = 3
Query:   15 PWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIA------EYR-AGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNV-KGSRTGWMSMSRNWGQNWQ-SNAVLVGQSLSFRVKASDRRSSTSWNIVPANW 659
            PW  A AT+YG    SG+ +  GACG  N+    Y    +  +  +F +G  CG+C+E+KC  +PA C     ++ +T  N+ P +                HFD +   F  +A      E R AGI+ + +RRV C+  GG + T +  +  N     VLV  VA  GD++++++ +     W  M  +WG  W+   A  +    S RV     +S  + +++P NW
Sbjct:   42 PWLPARATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKC-EQPAACSKQPVTVFITDMNYEPIS--------------AYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKFVADDGDVIQMDLQEAGLPAWRPMKLSWGAIWRMDTATPLKAPFSIRVTTESGKSLIAKDVIPVNW 256          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19
Identity = 73/239 (30.54%), Postives = 117/239 (48.95%), Query Frame = 3
Query:    6 SGGPWQSAHATFYGGSDASGTMEGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIA-------EYRAGIVPVSYRRVPCRKKG-GIRFTINGFRYFN--LVLVTNVAGAGDILRVNVKGSRTG--WMSMSRNWGQNWQSN-AVLVGQSLSFRVKASDR-RSSTSWNIVPANWQFGQTF 677
            S   W  A +T+YG     G+  GACGYGN  +Q  +    +A   +LF +G  CGAC+++KC ++ A   S +P + V  T+ CP            C     HFDL+   F  +A           G + + Y++V C   G  + F ++     N   VLV  V G G+I R+ +K +     W+SMS++WG  W+ + +  +   LS RV + +  ++  + N++PANWQ G  +
Sbjct:   43 SDSDWSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSAC--SKNP-VTVVITDECP-----------GCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQPGAIY 267          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.132e-18
Identity = 65/238 (27.31%), Postives = 112/238 (47.06%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG-GIRFTI--NGFRYFNLVLVTNVAGAGDILRVNVKGSRTG-------WMSMSRNWGQNWQ--SNAVLVGQSLSFRVKASDRRSSTSWNIVPANW 659
            G  W  A AT+YG    +G  +  GACG+ N+    +   T+  +  +F +G  CG+C++I+C  +P+ C     ++++T  N+ P                R HFDL+   F  +A+         +GI+ + +RRVPC   G  I F +       +  VLV      GD+++V++  S++        W  M  +WG  W+  SN  L     S R+++   ++  + N++PANW
Sbjct:   41 GSGWLPARATWYGAPTGAGPDDNGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPS-CSGNIETVIITDMNYYP--------------VARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSNPVYFAVLVEYEDLDGDVVQVDLMESKSAYGGATGVWTPMRESWGSIWRLDSNHRLQA-PFSLRIRSDSGKTLVANNVIPANW 262          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 65/233 (27.90%), Postives = 107/233 (45.92%), Query Frame = 3
Query:   12 GPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRP-HFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNVKGSRTG-WMSMSRNWGQNWQ-SNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQ 662
            G W +A AT+YG  + +G  +  GACG  N+    Y   TA  +  +F +G  CG+C+E++C  +P  C     ++ +T  N+                P  P HFDL+   F  +A+          GI+ V +RRV C+   G +   +  +  N     VLV  VA  GDI+ + ++   +  W  M  +WG  W+   A  +    S R+ +   +   + +I+PANW+
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CSGNPVTVFITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDIIPANWR 257          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 77/243 (31.69%), Postives = 116/243 (47.74%), Query Frame = 3
Query:    9 GGPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSIL-VTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTIN---GFRYFNLVLVTNVAGAGDILRVNV--KGSRTGWMSMSRNWGQNWQ--SNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            G  W  A AT+YG    +G  +  G CGY ++    +    A  +  +F +GL CG+CFEIKC ++P  C SG P ++ +T  N+ P                  HFDLA   F  +A+        +AGI+ + +RRV C+    + F +    G  Y  L LV  V G GDI+ V+V  KGS T +  +  +WG  W+  S+  L G  L+ R+       S   +++PANW+    +  K
Sbjct:   47 GKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVEC-SGKPVVVHITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVKEKGSDT-YEPLKHSWGAIWRKDSDKPLKG-PLTVRLTTEGGTKSVYDDVIPANWKANTAYTAK 270          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 60/230 (26.09%), Postives = 108/230 (46.96%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG---GIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTG---WMSMSRNWGQNWQSNA-VLVGQSLSFRVKASDRRSSTSWNIVPANW 659
            W +A AT+YG  + +G  +  GACG+  +    +   T+  +  L+  G  CG+C+ ++C   PA C   + ++ +T  N+ P +              + HFDL+   F ++A+        RAGI+ V + RVPC   G   G          +  VLV    G GD+ +V++K +  G   W  M  +WG  W+ ++   +    S R+++   ++  + +++P NW
Sbjct:   48 WGNAKATWYGQPNGAGAADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPA-CSGNAQTVAITDMNYFPLS--------------QYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPMRESWGSVWRLDSNHRLRAPFSIRIRSDSGKTLVAPDVIPLNW 262          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 64/233 (27.47%), Postives = 107/233 (45.92%), Query Frame = 3
Query:   12 GPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRP-HFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNVKGSRTG-WMSMSRNWGQNWQ-SNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQ 662
            G W +A AT+YG  + +G  +  GACG  N+    Y   TA  +  +F +G  CG+C+E++C  +P  C     ++ +T  N+                P  P HFDL+   F  +A+          GI+ V +RRV C+   G +   +  +  N     VLV  VA  GDI+ + ++   +  W  M  +WG  W+   A  +    S R+ +   +   + +++PANW+
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CSGNPVTVYITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWR 257          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 68/240 (28.33%), Postives = 114/240 (47.50%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTMEGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIA-------EYRAGIVPVSYRRVPCRKKG-GIRFTIN--GFRYFNLVLVTNVAGAGDI--LRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLS-FRVK---ASDRRSSTSWNIVPANWQFGQTFVGK 686
            W  A AT+YG ++  G+  GACGYG+L   + +     A+S  LF  G  CGAC++++C ++   C   + +I+ T            S +G        HFDL+   F  +A           G++ + YRR  C+ +G  I F +N     Y+  +L+    G GDI  + +   GS+  W+SM   WG NW    ++ G     F VK    S+ ++ ++ +++P+NW    T+  +
Sbjct:   40 WLPATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTI-CSKRAVTIIATD----------QSPSGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKE-WISMKHIWGANW---CIVEGPLKGPFSVKLTTLSNNKTLSATDVIPSNWVPKATYTSR 264          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.587e-18
Identity = 66/243 (27.16%), Postives = 108/243 (44.44%), Query Frame = 3
Query:   18 WQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG---GIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTG------WMSMSRNWGQNWQ--SNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686
            W  A AT+YG  + +G  +  GACG+ N     +   T+  +  LF +G  CGAC++I+C N P+ C     ++++T  N+ P                R HFDL+   F  +A          AGI+ + +RRVPC  +G              +  VLV      G +++++V  S         W  M R+WG  W+  +N  L G   S R+ +   ++  +  ++PANW+    +  K
Sbjct:   31 WLPAKATWYGQPNGAGPDDNGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPS-CSGQPRTVIITDMNYYP--------------VARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHVEAGSNPVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVWTPMRRSWGSIWRLDANHRLQG-PFSLRMVSESGQTVIAHQVIPANWRANTNYGSK 257          
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 68/235 (28.94%), Postives = 111/235 (47.23%), Query Frame = 3
Query:   24 SAHATFYGGSDASGTMEGACGYGNLYSQG--YGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGG---IRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSL--SFRVKASDRRSS---TSWNIVPANWQFGQTF 677
            +A  T+YG    +G+  GACGYG+  +    Y + +A    +LFNNG  CG C+++ C   PA   SGSP I VT T+ CP         GG C     H DL+      +A+         AG++ V+Y+R  C  +G     R       Y+   +V    G GD+  V ++ +   ++SM       W+ N+   G +L   F ++ +   S     ++N++PANW+  +++
Sbjct:   35 TAGVTWYGEPFGAGSTGGACGYGSAVANPPLYAMVSAG-GPSLFNNGKGCGTCYQVVCIGHPAC--SGSP-ITVTITDECP---------GGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQPAGGSFISMQEMRSAVWKVNS---GSALRGPFNIRLTSGESHKVIVAYNVIPANWKPDESY 253          
The following BLAST results are available for this feature:
BLAST of DC900295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EXPB9_ORYSJ5.084e-1929.13Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB2_ARATH5.084e-1930.54Putative expansin-B2 OS=Arabidopsis thaliana GN=EX... [more]
EXPB6_ORYSJ1.132e-1827.31Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB9_MAIZE2.523e-1827.90Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2[more]
EXB10_MAIZE2.523e-1831.69Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]
EXPB8_ORYSJ3.295e-1826.09Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB1_MAIZE3.295e-1827.47Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2[more]
EXPB1_ARATH3.295e-1828.33Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 ... [more]
EXPB2_ORYSJ9.587e-1827.16Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB4_ARATH3.643e-1728.94Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionDC900295 VSS Citrus sinensis cDNA clone VS28642 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900295 ID=DC900295; Name=DC900295; organism=Citrus sinensis; type=EST; length=717bp
ATTACTCCGGTGGCCCATGGCAAAGCGCCCATGCCACCTTTTACGGCGGC
TCTGACGCCTCCGGCACCATGGAAGGAGCGTGCGGTTACGGTAACTTGTA
CAGCCAGGGCTACGGCGTGAATACGGCGGCGCTGAGCACGGCGCTGTTCA
ACAATGGCTTGAGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCAAACGAA
CCCGCGTGGTGTCACTCCGGGAGCCCTTCCATTTTGGTTACCGCTACAAA
CTTTTGCCCGCCCAATTACGCACTCCCAAGTGACAATGGCGGCTGGTGTA
ACCCTCCTCGCCCTCATTTTGACCTCGCCATGCCCATGTTCCTCAAGATT
GCTGAGTACCGCGCCGGCATCGTCCCCGTCTCCTACCGCCGGGTACCATG
CCGCAAGAAGGGAGGAATCAGGTTCACAATAAACGGGTTCCGCTACTTCA
ACTTGGTTCTGGTCACCAACGTGGCGGGTGCAGGGGATATCCTGAGGGTG
AACGTGAAAGGGTCAAGAACTGGCTGGATGAGCATGAGCCGTAACTGGGG
CCAAAACTGGCAGTCTAACGCAGTGCTGGTAGGGCAGTCACTTTCGTTTA
GGGTGAAAGCCAGTGACCGACGCAGCTCCACCTCGTGGAACATTGTGCCA
GCTAACTGGCAGTTTGGTCAAACATTCGTTGGAAAGAATTTCAGAGTCTA
AGTTAACGGAGGAGTTT
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