DC900295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19 Identity = 67/230 (29.13%), Postives = 108/230 (46.96%), Query Frame = 3 Query: 15 PWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIA------EYR-AGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNV-KGSRTGWMSMSRNWGQNWQ-SNAVLVGQSLSFRVKASDRRSSTSWNIVPANW 659 PW A AT+YG SG+ + GACG N+ Y + + +F +G CG+C+E+KC +PA C ++ +T N+ P + HFD + F +A E R AGI+ + +RRV C+ GG + T + + N VLV VA GD++++++ + W M +WG W+ A + S RV +S + +++P NW Sbjct: 42 PWLPARATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKC-EQPAACSKQPVTVFITDMNYEPIS--------------AYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKFVADDGDVIQMDLQEAGLPAWRPMKLSWGAIWRMDTATPLKAPFSIRVTTESGKSLIAKDVIPVNW 256
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19 Identity = 73/239 (30.54%), Postives = 117/239 (48.95%), Query Frame = 3 Query: 6 SGGPWQSAHATFYGGSDASGTMEGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIA-------EYRAGIVPVSYRRVPCRKKG-GIRFTINGFRYFN--LVLVTNVAGAGDILRVNVKGSRTG--WMSMSRNWGQNWQSN-AVLVGQSLSFRVKASDR-RSSTSWNIVPANWQFGQTF 677 S W A +T+YG G+ GACGYGN +Q + +A +LF +G CGAC+++KC ++ A S +P + V T+ CP C HFDL+ F +A G + + Y++V C G + F ++ N VLV V G G+I R+ +K + W+SMS++WG W+ + + + LS RV + + ++ + N++PANWQ G + Sbjct: 43 SDSDWSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSAC--SKNP-VTVVITDECP-----------GCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQPGAIY 267
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.132e-18 Identity = 65/238 (27.31%), Postives = 112/238 (47.06%), Query Frame = 3 Query: 9 GGPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG-GIRFTI--NGFRYFNLVLVTNVAGAGDILRVNVKGSRTG-------WMSMSRNWGQNWQ--SNAVLVGQSLSFRVKASDRRSSTSWNIVPANW 659 G W A AT+YG +G + GACG+ N+ + T+ + +F +G CG+C++I+C +P+ C ++++T N+ P R HFDL+ F +A+ +GI+ + +RRVPC G I F + + VLV GD+++V++ S++ W M +WG W+ SN L S R+++ ++ + N++PANW Sbjct: 41 GSGWLPARATWYGAPTGAGPDDNGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPS-CSGNIETVIITDMNYYP--------------VARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSNPVYFAVLVEYEDLDGDVVQVDLMESKSAYGGATGVWTPMRESWGSIWRLDSNHRLQA-PFSLRIRSDSGKTLVANNVIPANW 262
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18 Identity = 65/233 (27.90%), Postives = 107/233 (45.92%), Query Frame = 3 Query: 12 GPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRP-HFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNVKGSRTG-WMSMSRNWGQNWQ-SNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQ 662 G W +A AT+YG + +G + GACG N+ Y TA + +F +G CG+C+E++C +P C ++ +T N+ P P HFDL+ F +A+ GI+ V +RRV C+ G + + + N VLV VA GDI+ + ++ + W M +WG W+ A + S R+ + + + +I+PANW+ Sbjct: 41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CSGNPVTVFITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDIIPANWR 257
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18 Identity = 77/243 (31.69%), Postives = 116/243 (47.74%), Query Frame = 3 Query: 9 GGPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSIL-VTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTIN---GFRYFNLVLVTNVAGAGDILRVNV--KGSRTGWMSMSRNWGQNWQ--SNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686 G W A AT+YG +G + G CGY ++ + A + +F +GL CG+CFEIKC ++P C SG P ++ +T N+ P HFDLA F +A+ +AGI+ + +RRV C+ + F + G Y L LV V G GDI+ V+V KGS T + + +WG W+ S+ L G L+ R+ S +++PANW+ + K Sbjct: 47 GKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVEC-SGKPVVVHITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVKEKGSDT-YEPLKHSWGAIWRKDSDKPLKG-PLTVRLTTEGGTKSVYDDVIPANWKANTAYTAK 270
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18 Identity = 60/230 (26.09%), Postives = 108/230 (46.96%), Query Frame = 3 Query: 18 WQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG---GIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTG---WMSMSRNWGQNWQSNA-VLVGQSLSFRVKASDRRSSTSWNIVPANW 659 W +A AT+YG + +G + GACG+ + + T+ + L+ G CG+C+ ++C PA C + ++ +T N+ P + + HFDL+ F ++A+ RAGI+ V + RVPC G G + VLV G GD+ +V++K + G W M +WG W+ ++ + S R+++ ++ + +++P NW Sbjct: 48 WGNAKATWYGQPNGAGAADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPA-CSGNAQTVAITDMNYFPLS--------------QYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPMRESWGSVWRLDSNHRLRAPFSIRIRSDSGKTLVAPDVIPLNW 262
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18 Identity = 64/233 (27.47%), Postives = 107/233 (45.92%), Query Frame = 3 Query: 12 GPWQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRP-HFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNVKGSRTG-WMSMSRNWGQNWQ-SNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQ 662 G W +A AT+YG + +G + GACG N+ Y TA + +F +G CG+C+E++C +P C ++ +T N+ P P HFDL+ F +A+ GI+ V +RRV C+ G + + + N VLV VA GDI+ + ++ + W M +WG W+ A + S R+ + + + +++PANW+ Sbjct: 41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CSGNPVTVYITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWR 257
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18 Identity = 68/240 (28.33%), Postives = 114/240 (47.50%), Query Frame = 3 Query: 18 WQSAHATFYGGSDASGTMEGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIA-------EYRAGIVPVSYRRVPCRKKG-GIRFTIN--GFRYFNLVLVTNVAGAGDI--LRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSLS-FRVK---ASDRRSSTSWNIVPANWQFGQTFVGK 686 W A AT+YG ++ G+ GACGYG+L + + A+S LF G CGAC++++C ++ C + +I+ T S +G HFDL+ F +A G++ + YRR C+ +G I F +N Y+ +L+ G GDI + + GS+ W+SM WG NW ++ G F VK S+ ++ ++ +++P+NW T+ + Sbjct: 40 WLPATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTI-CSKRAVTIIATD----------QSPSGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKE-WISMKHIWGANW---CIVEGPLKGPFSVKLTTLSNNKTLSATDVIPSNWVPKATYTSR 264
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 9.587e-18 Identity = 66/243 (27.16%), Postives = 108/243 (44.44%), Query Frame = 3 Query: 18 WQSAHATFYGGSDASGTME--GACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG---GIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTG------WMSMSRNWGQNWQ--SNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 686 W A AT+YG + +G + GACG+ N + T+ + LF +G CGAC++I+C N P+ C ++++T N+ P R HFDL+ F +A AGI+ + +RRVPC +G + VLV G +++++V S W M R+WG W+ +N L G S R+ + ++ + ++PANW+ + K Sbjct: 31 WLPAKATWYGQPNGAGPDDNGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPS-CSGQPRTVIITDMNYYP--------------VARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHVEAGSNPVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVWTPMRRSWGSIWRLDANHRLQG-PFSLRMVSESGQTVIAHQVIPANWRANTNYGSK 257
BLAST of DC900295 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.643e-17 Identity = 68/235 (28.94%), Postives = 111/235 (47.23%), Query Frame = 3 Query: 24 SAHATFYGGSDASGTMEGACGYGNLYSQG--YGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGG---IRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNWQSNAVLVGQSL--SFRVKASDRRSS---TSWNIVPANWQFGQTF 677 +A T+YG +G+ GACGYG+ + Y + +A +LFNNG CG C+++ C PA SGSP I VT T+ CP GG C H DL+ +A+ AG++ V+Y+R C +G R Y+ +V G GD+ V ++ + ++SM W+ N+ G +L F ++ + S ++N++PANW+ +++ Sbjct: 35 TAGVTWYGEPFGAGSTGGACGYGSAVANPPLYAMVSAG-GPSLFNNGKGCGTCYQVVCIGHPAC--SGSP-ITVTITDECP---------GGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQPAGGSFISMQEMRSAVWKVNS---GSALRGPFNIRLTSGESHKVIVAYNVIPANWKPDESY 253 The following BLAST results are available for this feature:
BLAST of DC900295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 95
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900295 ID=DC900295; Name=DC900295; organism=Citrus sinensis; type=EST; length=717bpback to top |